### LOG ###
aureme --run=t_lutea --cmd="check_input"
aureme --run=t_lutea --cmd="orthology_based"
aureme --run=t_lutea --cmd="annotation_based"
aureme --run=t_lutea --cmd="sbml_mapping SBML=output_pantograph_athaliana.sbml DB=metacyc"
aureme --run=t_lutea --cmd="sbml_mapping SBML=output_pantograph_creinhardtii.sbml DB=metacyc"
aureme --run=t_lutea --cmd="sbml_mapping SBML=output_pantograph_synechocystis.sbml DB=metacyc"
aureme --run=t_lutea --cmd="draft"
aureme --run=t_lutea --cmd="get_compart NETWORK=draft"
aureme --run=t_lutea --cmd="change_compart OLD=cyt NEW=c NETWORK=draft NEW_NETWORK=draft_compart_curated"
aureme --run=t_lutea --cmd="change_compart OLD=C_c NEW=c NETWORK=draft_compart_curated"
aureme --run=t_lutea --cmd="change_compart OLD=C_v NEW=v NETWORK=draft_compart_curated"
aureme --run=t_lutea --cmd="change_compart OLD=C_p NEW=p NETWORK=draft_compart_curated"
aureme --run=t_lutea --cmd="change_compart OLD=C_x NEW=x NETWORK=draft_compart_curated"
aureme --run=t_lutea --cmd="change_compart OLD=C_m NEW=m NETWORK=draft_compart_curated"
aureme --run=t_lutea --cmd="get_compart NETWORK=draft_compart_curated"
aureme --run=t_lutea --cmd="set_medium NETWORK=draft_compart_curated NEW_NETWORK=draft_medium"
aureme --run=t_lutea --cmd="gap_filling NETWORK=draft_medium NEW_NETWORK=draft_gapfilled"
aureme --run=t_lutea --cmd="curation NETWORK=draft_gapfilled NEW_NETWORK=Tlutea_final DATA=export_biomass_rxn.csv"
aureme --run=t_lutea --cmd="curation NETWORK=Tlutea_final DATA=reactions_PWY-6475_tiso_add.csv"
aureme --run=t_lutea --cmd="set_fba ID=RME294 NETWORK=Tlutea_final"
aureme --run=t_lutea --cmd="summary NETWORK=Tlutea_final"
aureme --run=t_lutea --cmd="wiki_pages NETWORK=Tlutea_final ID=TISO NAME=Tisocrysis_lutea"