Difference between revisions of "CPD-14604"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNDECARBOX-RXN ORNDECARBOX-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.ex...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN 3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN] == * direction: ** L...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNDECARBOX-RXN ORNDECARBOX-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN 3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** 3-hydroxyisobutyrate_mitochondrial
 +
** 3-hydroxyisobutyrate_dehydrogenase
 +
** uncharacterized_oxidoreductase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.1.17 EC-4.1.1.17]
+
** [http://enzyme.expasy.org/EC/1.1.1.31 EC-1.1.1.31]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[L-ORNITHINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[PUTRESCINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[NAD]][c] '''+''' 1 [[CPD-12175]][c] '''=>''' 1 [[CH3-MALONATE-S-ALD]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-ornithine[c] '''+''' 1 H+[c] '''=>''' 1 putrescine[c] '''+''' 1 CO2[c]
+
** 1 NAD+[c] '''+''' 1 (S)-3-hydroxy-isobutanoate[c] '''=>''' 1 (S)-methylmalonate-semialdehyde[c] '''+''' 1 NADH[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10737]]
+
* [[Tiso_gene_19590]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_5857]]
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_19771]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_19772]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_19592]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_7107]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[ORNDEG-PWY]], superpathway of ornithine degradation: [http://metacyc.org/META/NEW-IMAGE?object=ORNDEG-PWY ORNDEG-PWY]
+
* [[VALDEG-PWY]], L-valine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY]
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''8''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-6305]], putrescine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6305 PWY-6305]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-46]], putrescine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-46 PWY-46]
+
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 +
*** [[creinhardtii]]
 +
*** [[athaliana]]
 
*** [[esiliculosus]]
 
*** [[esiliculosus]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22964 22964]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00670 R00670]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02047 R02047]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P24169 P24169]
+
** [http://www.uniprot.org/uniprot/P29266 P29266]
−
** [http://www.uniprot.org/uniprot/P27121 P27121]
+
** [http://www.uniprot.org/uniprot/P28811 P28811]
−
** [http://www.uniprot.org/uniprot/P27116 P27116]
+
** [http://www.uniprot.org/uniprot/Q8XAE4 Q8XAE4]
−
** [http://www.uniprot.org/uniprot/P27120 P27120]
+
** [http://www.uniprot.org/uniprot/Q55702 Q55702]
−
** [http://www.uniprot.org/uniprot/P43099 P43099]
+
** [http://www.uniprot.org/uniprot/Q9XTI0 Q9XTI0]
−
** [http://www.uniprot.org/uniprot/Q9X2I6 Q9X2I6]
+
−
** [http://www.uniprot.org/uniprot/P08432 P08432]
+
−
** [http://www.uniprot.org/uniprot/P27118 P27118]
+
−
** [http://www.uniprot.org/uniprot/P11926 P11926]
+
−
** [http://www.uniprot.org/uniprot/P14019 P14019]
+
−
** [http://www.uniprot.org/uniprot/P00860 P00860]
+
−
** [http://www.uniprot.org/uniprot/P09057 P09057]
+
−
** [http://www.uniprot.org/uniprot/Q9TZZ6 Q9TZZ6]
+
−
** [http://www.uniprot.org/uniprot/P44317 P44317]
+
−
** [http://www.uniprot.org/uniprot/O66940 O66940]
+
−
** [http://www.uniprot.org/uniprot/P27119 P27119]
+
−
** [http://www.uniprot.org/uniprot/P49725 P49725]
+
−
** [http://www.uniprot.org/uniprot/P50134 P50134]
+
−
** [http://www.uniprot.org/uniprot/P93351 P93351]
+
−
** [http://www.uniprot.org/uniprot/P93357 P93357]
+
−
** [http://www.uniprot.org/uniprot/O15696 O15696]
+
−
** [http://www.uniprot.org/uniprot/Q84527 Q84527]
+
−
** [http://www.uniprot.org/uniprot/P41931 P41931]
+
−
** [http://www.uniprot.org/uniprot/O69865 O69865]
+
−
** [http://www.uniprot.org/uniprot/Q9UQW9 Q9UQW9]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-4.1.1.17}}
+
{{#set: common name=3-hydroxyisobutyrate_mitochondrial}}
−
{{#set: gene associated=Tiso_gene_10737}}
+
{{#set: common name=3-hydroxyisobutyrate_dehydrogenase}}
−
{{#set: in pathway=ORNDEG-PWY|PWY-6305|PWY-46}}
+
{{#set: common name=uncharacterized_oxidoreductase}}
 +
{{#set: ec number=EC-1.1.1.31}}
 +
{{#set: gene associated=Tiso_gene_19590|Tiso_gene_5857|Tiso_gene_19771|Tiso_gene_19772|Tiso_gene_19592|Tiso_gene_7107}}
 +
{{#set: in pathway=VALDEG-PWY}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: reconstruction source=creinhardtii|athaliana|esiliculosus}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:32, 10 January 2018

Reaction 3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-hydroxyisobutyrate_mitochondrial
    • 3-hydroxyisobutyrate_dehydrogenase
    • uncharacterized_oxidoreductase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NAD+[c] + 1 (S)-3-hydroxy-isobutanoate[c] => 1 (S)-methylmalonate-semialdehyde[c] + 1 NADH[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • VALDEG-PWY, L-valine degradation I: VALDEG-PWY
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-14604&oldid=18305"