Difference between revisions of "Tiso gene 5164"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12905 CPD-12905] == * smiles: ** CC(C)=CC(O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** indole3-glycerol_phosphat...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12905 CPD-12905] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] ==
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* smiles:
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* direction:
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** CC(C)=CC(O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]
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** LEFT-TO-RIGHT
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* inchi key:
+
−
** InChIKey=OLZYNLSKRKFUJC-FPVIQYCMSA-J
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* common name:
 
* common name:
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** 3-hydroxy-5-methylhex-4-enoyl-CoA
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** indole3-glycerol_phosphate_synthase
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* molecular weight:
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* ec number:
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** 889.657   
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** [http://enzyme.expasy.org/EC/4.1.1.48 EC-4.1.1.48]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[RXN-11919]]
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** 1 [[CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
 +
** 1 1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate[c] '''+''' 1 H+[c] '''=>''' 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''+''' 1 H2O[c] '''+''' 1 CO2[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_4521]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_18384]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_10298]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_10297]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
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** '''6''' reactions found over '''6''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=50986102 50986102]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23476 23476]
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* LIGAND-CPD:
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?C16469 C16469]
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** [http://www.genome.jp/dbget-bin/www_bget?R03508 R03508]
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* HMDB : HMDB60373
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* UNIPROT:
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{{#set: smiles=CC(C)=CC(O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]}}
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** [http://www.uniprot.org/uniprot/P42393 P42393]
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{{#set: inchi key=InChIKey=OLZYNLSKRKFUJC-FPVIQYCMSA-J}}
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** [http://www.uniprot.org/uniprot/P20577 P20577]
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{{#set: common name=3-hydroxy-5-methylhex-4-enoyl-CoA}}
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** [http://www.uniprot.org/uniprot/P18304 P18304]
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{{#set: molecular weight=889.657    }}
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** [http://www.uniprot.org/uniprot/Q06121 Q06121]
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{{#set: produced by=RXN-11919}}
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** [http://www.uniprot.org/uniprot/Q9V1G3 Q9V1G3]
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** [http://www.uniprot.org/uniprot/P20578 P20578]
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** [http://www.uniprot.org/uniprot/Q9PI11 Q9PI11]
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** [http://www.uniprot.org/uniprot/Q58328 Q58328]
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** [http://www.uniprot.org/uniprot/Q9JSN4 Q9JSN4]
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** [http://www.uniprot.org/uniprot/P03964 P03964]
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** [http://www.uniprot.org/uniprot/P00910 P00910]
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** [http://www.uniprot.org/uniprot/P00909 P00909]
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** [http://www.uniprot.org/uniprot/P00911 P00911]
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** [http://www.uniprot.org/uniprot/P17217 P17217]
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** [http://www.uniprot.org/uniprot/P20409 P20409]
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** [http://www.uniprot.org/uniprot/P00937 P00937]
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** [http://www.uniprot.org/uniprot/P00908 P00908]
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** [http://www.uniprot.org/uniprot/P05328 P05328]
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** [http://www.uniprot.org/uniprot/P06531 P06531]
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** [http://www.uniprot.org/uniprot/P18483 P18483]
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** [http://www.uniprot.org/uniprot/P25170 P25170]
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** [http://www.uniprot.org/uniprot/P26938 P26938]
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** [http://www.uniprot.org/uniprot/P24773 P24773]
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** [http://www.uniprot.org/uniprot/Q01999 Q01999]
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** [http://www.uniprot.org/uniprot/Q9YGB5 Q9YGB5]
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** [http://www.uniprot.org/uniprot/Q9S591 Q9S591]
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** [http://www.uniprot.org/uniprot/Q9X7C7 Q9X7C7]
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** [http://www.uniprot.org/uniprot/Q92370 Q92370]
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** [http://www.uniprot.org/uniprot/Q9ZFA7 Q9ZFA7]
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** [http://www.uniprot.org/uniprot/P94327 P94327]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=indole3-glycerol_phosphate_synthase}}
 +
{{#set: ec number=EC-4.1.1.48}}
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{{#set: gene associated=Tiso_gene_4521|Tiso_gene_18384|Tiso_gene_10298|Tiso_gene_10297}}
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{{#set: in pathway=TRPSYN-PWY}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 18:35, 18 March 2018

Reaction IGPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • indole3-glycerol_phosphate_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • TRPSYN-PWY, L-tryptophan biosynthesis: TRPSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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