Difference between revisions of "3.4.21.89-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ATPSYN-RXN ATPSYN-RXN] == * direction: ** REVERSIBLE * common name: ** v-type_proton_atpase ** ORF...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12583 RXN-12583] == * direction: ** LEFT-TO-RIGHT * common name: ** pyruvate:thiamin diphosphat...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ATPSYN-RXN ATPSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12583 RXN-12583] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** v-type_proton_atpase
+
** pyruvate:thiamin diphosphate acetaldehydetransferase (decarboxylating)
 +
** pyruvate_dehydrogenase_e1_component_subunit_alpha-_mitochondrial
 +
** dihydrolipoamide_acetyltransferase
 
** ORF
 
** ORF
−
** vacuolar_h+-_sector_c
 
−
** v-type_proton_atpase_catalytic_subunit_a
 
−
** vacuolar_h+-atpase_v0_subunits_a
 
−
** atp_synthase_gamma_chloroplastic
 
−
** atp_synthase_gamma_subunit
 
−
** atp_synthase_subunit_mitochondrial
 
−
** ycf35
 
−
** atp_synthase_delta_mitochondrial
 
−
** v-type_proton_atpase_subunit_h
 
−
** v-type_protonatpasesubunitd1
 
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/3.6.3.14 EC-3.6.3.14]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 4 [[PROTON]][e] '''<=>''' 3 [[PROTON]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[WATER]][c]
+
** 1 [[THIAMINE-PYROPHOSPHATE]][c] '''+''' 1 [[PYRUVATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[2-ALPHA-HYDROXYETHYL-THPP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ADP[c] '''+''' 1 phosphate[c] '''+''' 4 H+[e] '''<=>''' 3 H+[c] '''+''' 1 ATP[c] '''+''' 1 H2O[c]
+
** 1 thiamine diphosphate[c] '''+''' 1 pyruvate[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 2-(&alpha;-hydroxyethyl)thiamine diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_11754]]
+
* [[Tiso_gene_7519]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***EC-NUMBER
 
−
** EXPERIMENTAL_ANNOTATION
 
 
***EC-NUMBER
 
***EC-NUMBER
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
* [[Tiso_gene_9460]]
+
* [[Tiso_gene_17539]]
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_7213]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1365]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_7215]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_11753]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_11155]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6012]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
* [[Tiso_gene_6592]]
+
* [[Tiso_gene_11362]]
−
** IN-SILICO_ANNOTATION
+
** [[pantograph]]-[[athaliana]]
−
***EC-NUMBER
+
* [[Tiso_gene_6983]]
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_18105]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5307]]
+
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
* [[Tiso_gene_15850]]
+
* [[Tiso_gene_2515]]
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10981]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2798]]
+
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
* [[Tiso_gene_17383]]
+
* [[Tiso_gene_2693]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_12618]]
 
−
** IN-SILICO_ANNOTATION
 
−
***AUTOMATED-NAME-MATCH
 
−
* [[Tiso_gene_11192]]
 
−
** EXPERIMENTAL_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_1366]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[esiliculosus]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7219]], adenosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7219 PWY-7219]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[manual]]:
+
** Source: [[orthology-esiliculosus]]
−
** [[primary_network]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pathwaytools]]
−
*** [[in-silico_annotation]]
+
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* LIGAND-RXN:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20852 20852]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00014 R00014]
−
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=v-type_proton_atpase}}
+
{{#set: common name=pyruvate:thiamin diphosphate acetaldehydetransferase (decarboxylating)}}
 +
{{#set: common name=pyruvate_dehydrogenase_e1_component_subunit_alpha-_mitochondrial}}
 +
{{#set: common name=dihydrolipoamide_acetyltransferase}}
 
{{#set: common name=ORF}}
 
{{#set: common name=ORF}}
−
{{#set: common name=vacuolar_h+-_sector_c}}
+
{{#set: gene associated=Tiso_gene_7519|Tiso_gene_17539|Tiso_gene_11362|Tiso_gene_6983|Tiso_gene_2515|Tiso_gene_2693}}
−
{{#set: common name=v-type_proton_atpase_catalytic_subunit_a}}
+
{{#set: in pathway=}}
−
{{#set: common name=vacuolar_h+-atpase_v0_subunits_a}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: common name=atp_synthase_gamma_chloroplastic}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
−
{{#set: common name=atp_synthase_gamma_subunit}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: common name=atp_synthase_subunit_mitochondrial}}
+
−
{{#set: common name=ycf35}}
+
−
{{#set: common name=atp_synthase_delta_mitochondrial}}
+
−
{{#set: common name=v-type_proton_atpase_subunit_h}}
+
−
{{#set: common name=v-type_protonatpasesubunitd1}}
+
−
{{#set: ec number=EC-3.6.3.14}}
+
−
{{#set: gene associated=Tiso_gene_11754|Tiso_gene_9460|Tiso_gene_7213|Tiso_gene_1365|Tiso_gene_7215|Tiso_gene_11753|Tiso_gene_11155|Tiso_gene_6012|Tiso_gene_6592|Tiso_gene_18105|Tiso_gene_5307|Tiso_gene_15850|Tiso_gene_10981|Tiso_gene_2798|Tiso_gene_17383|Tiso_gene_12618|Tiso_gene_11192|Tiso_gene_1366}}
+
−
{{#set: in pathway=PWY-7219}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 00:09, 19 March 2018

Reaction RXN-12583

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • pyruvate:thiamin diphosphate acetaldehydetransferase (decarboxylating)
    • pyruvate_dehydrogenase_e1_component_subunit_alpha-_mitochondrial
    • dihydrolipoamide_acetyltransferase
    • ORF
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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