Difference between revisions of "CPD-380"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=LYS LYS] == * smiles: ** C([N+])CCCC([N+])C([O-])=O * inchi key: ** InChIKey=KDXKERNSBIXSRK-YFK...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7607 RXN-7607] == * direction: ** LEFT-TO-RIGHT * common name: ** 5_-nucleotidase ** 5_deoxy_cy...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=LYS LYS] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7607 RXN-7607] ==
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* smiles:
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* direction:
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** C([N+])CCCC([N+])C([O-])=O
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=KDXKERNSBIXSRK-YFKPBYRVSA-O
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* common name:
 
* common name:
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** L-lysine
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** 5_-nucleotidase
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* molecular weight:
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** 5_deoxy_cytosolic_type_c_protein
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** 147.197   
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** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
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** ORF
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* ec number:
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** [http://enzyme.expasy.org/EC/3.1.3.99 EC-3.1.3.99]
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** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
 
* Synonym(s):
 
* Synonym(s):
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** K
 
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** lysine
 
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** L-lys
 
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** lys
 
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** 2,6-diaminohexanoic acid
 
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** lysine acid
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RME144]]
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* With identifiers:
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* [[LYSINE--TRNA-LIGASE-RXN]]
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** 1 [[IMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[INOSINE]][c] '''+''' 1 [[Pi]][c]
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* [[LYSDECARBOX-RXN]]
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* With common name(s):
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* [[1.5.1.8-RXN]]
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** 1 IMP[c] '''+''' 1 H2O[c] '''=>''' 1 inosine[c] '''+''' 1 phosphate[c]
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== Reaction(s) known to produce the compound ==
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* [[1.5.1.7-RXN]]
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== Genes associated with this reaction  ==
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* [[DIAMINOPIMDECARB-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) of unknown directionality ==
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* [[Tiso_gene_14246]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6988]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_13929]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_5911]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_6640]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_14434]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_14435]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-6596]], adenosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 56-87-1
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* RHEA:
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* METABOLIGHTS : MTBLC32551
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27718 27718]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5460926 5460926]
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** [http://www.genome.jp/dbget-bin/www_bget?R01126 R01126]
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* HMDB : HMDB00182
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{{#set: direction=LEFT-TO-RIGHT}}
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* LIGAND-CPD:
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{{#set: common name=5_-nucleotidase}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00047 C00047]
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{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
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* CHEMSPIDER:
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{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
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** [http://www.chemspider.com/Chemical-Structure.5747.html 5747]
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{{#set: common name=ORF}}
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* CHEBI:
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{{#set: ec number=EC-3.1.3.99}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=32551 32551]
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{{#set: ec number=EC-3.1.3.5}}
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* BIGG : lys__L
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{{#set: gene associated=Tiso_gene_14246|Tiso_gene_6988|Tiso_gene_13929|Tiso_gene_5911|Tiso_gene_6640|Tiso_gene_14434|Tiso_gene_14435}}
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* BIGG : 33655
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{{#set: in pathway=PWY-6596}}
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{{#set: smiles=C([N+])CCCC([N+])C([O-])=O}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: inchi key=InChIKey=KDXKERNSBIXSRK-YFKPBYRVSA-O}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: common name=L-lysine}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: molecular weight=147.197    }}
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{{#set: common name=K|lysine|L-lys|lys|2,6-diaminohexanoic acid|lysine acid}}
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{{#set: consumed by=RME144|LYSINE--TRNA-LIGASE-RXN|LYSDECARBOX-RXN|1.5.1.8-RXN}}
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{{#set: produced by=1.5.1.7-RXN|DIAMINOPIMDECARB-RXN}}
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Revision as of 00:14, 19 March 2018

Reaction RXN-7607

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 5_-nucleotidase
    • 5_deoxy_cytosolic_type_c_protein
    • probable_cytosolic_imp-gmp_specific_5_-nucleotidase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 IMP[c] + 1 H2O[c] => 1 inosine[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6596, adenosine nucleotides degradation I: PWY-6596
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-380&oldid=29313"