Difference between revisions of "Tiso gene 3410"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.1.139-RXN 2.7.1.139-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ras-related_gtp-bin...")
(Created page with "Category:Gene == Gene Tiso_gene_15395 == * right end position: ** 4968 * transcription direction: ** NEGATIVE * left end position: ** 109 * centisome position: ** 2.162698...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.1.139-RXN 2.7.1.139-RXN] ==
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== Gene Tiso_gene_15395 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 4968
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* common name:
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* transcription direction:
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** ras-related_gtp-binding_protein
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.7.1.159 EC-2.7.1.159]
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** 109
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* centisome position:
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** 2.1626985   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[GALPMUT-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[INOSITOL-1-3-4-TRIPHOSPHATE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CPD-506]][c] '''+''' 1 [[ADP]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 ATP[c] '''+''' 1 D-myo-inositol (1,3,4)-trisphosphate[c] '''=>''' 1 H+[c] '''+''' 1 D-myo-inositol (1,3,4,5)-tetrakisphosphate[c] '''+''' 1 ADP[c]
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* Reaction: [[R02984]]
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** Source: [[orthology-synechocystis]]
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== Genes associated with this reaction  ==
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* Reaction: [[UDP-ARABINOSE-4-EPIMERASE-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_15232]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-6554]], 1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6554 PWY-6554]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[UDPGLUCEPIM-RXN]]
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** Source: [[orthology-athaliana]]
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== Pathways associated ==
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* [[OANTIGEN-PWY]]
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* [[PWY-3821]]
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* [[PWY-6397]]
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* [[PWY-6317]]
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* [[PWY-63]]
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* [[PWY-6527]]
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* [[PWY-7328]]
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* [[PWY-7622]]
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* [[COLANSYN-PWY]]
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* [[PWY66-422]]
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* [[PWY-7344]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=4968}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13253 13253]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=109}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03428 R03428]
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{{#set: centisome position=2.1626985    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=GALPMUT-RXN|R02984|UDP-ARABINOSE-4-EPIMERASE-RXN|UDPGLUCEPIM-RXN}}
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{{#set: common name=ras-related_gtp-binding_protein}}
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{{#set: pathway associated=OANTIGEN-PWY|PWY-3821|PWY-6397|PWY-6317|PWY-63|PWY-6527|PWY-7328|PWY-7622|COLANSYN-PWY|PWY66-422|PWY-7344}}
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{{#set: ec number=EC-2.7.1.159}}
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{{#set: gene associated=Tiso_gene_15232}}
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{{#set: in pathway=PWY-6554}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 15:59, 21 March 2018

Gene Tiso_gene_15395

  • right end position:
    • 4968
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 109
  • centisome position:
    • 2.1626985
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_3410&oldid=37931"