Difference between revisions of "Tiso gene 5405"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-20 RXN1F-20] == * direction: ** LEFT-TO-RIGHT * common name: ** Magnesium chelatase, H subuni...")
(Created page with "Category:Gene == Gene Tiso_gene_14451 == * right end position: ** 4969 * transcription direction: ** NEGATIVE * left end position: ** 3529 * centisome position: ** 62.4822...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-20 RXN1F-20] ==
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== Gene Tiso_gene_14451 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 4969
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* common name:
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* transcription direction:
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** Magnesium chelatase, H subunit
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** NEGATIVE
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** h_subunit_of_mg_chelatase
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* left end position:
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** magnesium_chelatase
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** 3529
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/6.6.1.1 EC-6.6.1.1]
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** 62.482296   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-15556]]
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** 1 [[WATER]][c] '''+''' 1 [[MG+2]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c] '''+''' 1 [[ATP]][c] '''=>''' 3 [[PROTON]][c] '''+''' 1 [[MG-PROTOPORPHYRIN]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c]
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* With common name(s):
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** 1 H2O[c] '''+''' 1 Mg2+[c] '''+''' 1 protoporphyrin IX[c] '''+''' 1 ATP[c] '''=>''' 3 H+[c] '''+''' 1 Mg-protoporphyrin[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_9870]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_11960]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_5993]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-7511]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=4969}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13961 13961]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=3529}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03877 R03877]
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{{#set: centisome position=62.482296    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=RXN-15556}}
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{{#set: common name=Magnesium chelatase, H subunit}}
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{{#set: pathway associated=PWY-7511}}
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{{#set: common name=h_subunit_of_mg_chelatase}}
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{{#set: common name=magnesium_chelatase}}
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{{#set: ec number=EC-6.6.1.1}}
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{{#set: gene associated=Tiso_gene_9870|Tiso_gene_11960|Tiso_gene_5993}}
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{{#set: in pathway=PWY-5531|CHLOROPHYLL-SYN|PWY-7159}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-athaliana|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 16:02, 21 March 2018

Gene Tiso_gene_14451

  • right end position:
    • 4969
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 3529
  • centisome position:
    • 62.482296
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5405&oldid=38255"