Difference between revisions of "SERDEG-PWY"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8999 RXN-8999] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=SERDEG-PWY SERDEG-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TA...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8999 RXN-8999] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=SERDEG-PWY SERDEG-PWY] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
−
* ec number:
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
−
** [http://enzyme.expasy.org/EC/2.5.1.31 EC-2.5.1.31]
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 +
* common name:
 +
** L-serine degradation
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''2''' reactions found over '''3''' reactions in the full pathway
−
** 1 [[FARNESYL-PP]][c] '''+''' 8 [[DELTA3-ISOPENTENYL-PP]][c] '''=>''' 8 [[PPI]][c] '''+''' 1 [[UNDECAPRENYL-DIPHOSPHATE]][c]
+
* [[RXN-15124]]
−
* With common name(s):
+
** 0 associated gene:
−
** 1 (2E,6E)-farnesyl diphosphate[c] '''+''' 8 isopentenyl diphosphate[c] '''=>''' 8 diphosphate[c] '''+''' 1 di-trans,octa-cis-undecaprenyl diphosphate[c]
+
** 2 reconstruction source(s) associated:
−
 
+
*** [[annotation-experimental_annotation]]
−
== Genes associated with this reaction  ==
+
*** [[annotation-in-silico_annotation]]
−
Genes have been associated with this reaction based on different elements listed below.
+
* [[RXN-15127]]
−
* [[Tiso_gene_8531]]
+
** 0 associated gene:
−
** [[pantograph]]-[[athaliana]]
+
** 2 reconstruction source(s) associated:
−
** [[pantograph]]-[[synechocystis]]
+
*** [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
−
== Pathways  ==
+
== Reaction(s) not found ==
−
* [[PWY-5785]], di-trans,poly-cis-undecaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5785 PWY-5785]
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15125 RXN-15125]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[synechocystis]]
+
−
*** [[esiliculosus]]
+
−
*** [[athaliana]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* ECOCYC:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27551 27551]
+
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=SERDEG-PWY SERDEG-PWY]
−
* LIGAND-RXN:
+
{{#set: taxonomic range=TAX-4751}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R06447 R06447]
+
{{#set: taxonomic range=TAX-33208}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R07269 R07269]
+
{{#set: taxonomic range=TAX-2}}
−
* UNIPROT:
+
{{#set: common name=L-serine degradation}}
−
** [http://www.uniprot.org/uniprot/O82827 O82827]
+
{{#set: reaction found=2}}
−
** [http://www.uniprot.org/uniprot/O43091 O43091]
+
{{#set: total reaction=3}}
−
** [http://www.uniprot.org/uniprot/Q9JX35 Q9JX35]
+
{{#set: completion rate=67.0}}
−
** [http://www.uniprot.org/uniprot/O67291 O67291]
+
−
** [http://www.uniprot.org/uniprot/Q9X1B8 Q9X1B8]
+
−
** [http://www.uniprot.org/uniprot/O34559 O34559]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: ec number=EC-2.5.1.31}}
+
−
{{#set: gene associated=Tiso_gene_8531}}
+
−
{{#set: in pathway=PWY-5785}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
+

Latest revision as of 20:21, 21 March 2018

Pathway SERDEG-PWY

Reaction(s) found

2 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=SERDEG-PWY&oldid=41072"