Difference between revisions of "2.5.1.32-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DTDP-DEOH-DEOXY-GLUCOSE DTDP-DEOH-DEOXY-GLUCOSE] == * smiles: ** CC1(=CN(C(=O)NC(=O)1)C3(CC(O)C...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.32-RXN 2.5.1.32-RXN] == * direction: ** LEFT-TO-RIGHT * Synonym(s): ** PSase ** geranylgerany...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DTDP-DEOH-DEOXY-GLUCOSE DTDP-DEOH-DEOXY-GLUCOSE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.32-RXN 2.5.1.32-RXN] ==
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* smiles:
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* direction:
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** CC1(=CN(C(=O)NC(=O)1)C3(CC(O)C(COP(=O)([O-])OP(=O)([O-])OC2(OC(C)C(=O)C(O)C(O)2))O3))
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=PSXWNITXWWECNY-UCBTUHGZSA-L
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* common name:
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** dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
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* molecular weight:
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** 544.302   
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* Synonym(s):
 
* Synonym(s):
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** TDP-4-keto-6-deoxy--α-D-glucose
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** PSase
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** TDP-4-oxo-6-deoxy--α-D-glucose
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** geranylgeranyl-diphosphate geranylgeranyltransferase
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** dTDP-4-oxo-6-deoxy--α-D-glucose
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** dTDP-6-deoxy-α-D-xylo-4-hexosulose
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** dTDP-6-deoxy-α-D-xylohex-4-ulose
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** dTDP-4-dehydro-6-deoxy-α-D-glucose
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[DTDPGLUCDEHYDRAT-RXN]]
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** 2 [[GERANYLGERANYL-PP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-464]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 2 geranylgeranyl diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 prephytoene diphosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_15914]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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* BIGG : dtdp4d6dg
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22296 22296]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25244163 25244163]
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* LIGAND-RXN:
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* HMDB : HMDB01399
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** [http://www.genome.jp/dbget-bin/www_bget?R02065 R02065]
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* LIGAND-CPD:
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* UNIPROT:
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** [http://www.genome.jp/dbget-bin/www_bget?C11907 C11907]
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** [http://www.uniprot.org/uniprot/P53609 P53609]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P37295 P37295]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57649 57649]
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** [http://www.uniprot.org/uniprot/P22872 P22872]
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* METABOLIGHTS : MTBLC57649
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** [http://www.uniprot.org/uniprot/P53610 P53610]
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{{#set: smiles=CC1(=CN(C(=O)NC(=O)1)C3(CC(O)C(COP(=O)([O-])OP(=O)([O-])OC2(OC(C)C(=O)C(O)C(O)2))O3))}}
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** [http://www.uniprot.org/uniprot/P53612 P53612]
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{{#set: inchi key=InChIKey=PSXWNITXWWECNY-UCBTUHGZSA-L}}
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** [http://www.uniprot.org/uniprot/P17056 P17056]
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{{#set: common name=dTDP-4-dehydro-6-deoxy-α-D-glucopyranose}}
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** [http://www.uniprot.org/uniprot/P49293 P49293]
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{{#set: molecular weight=544.302    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=TDP-4-keto-6-deoxy--α-D-glucose|TDP-4-oxo-6-deoxy--α-D-glucose|dTDP-4-oxo-6-deoxy--α-D-glucose|dTDP-6-deoxy-α-D-xylo-4-hexosulose|dTDP-6-deoxy-α-D-xylohex-4-ulose|dTDP-4-dehydro-6-deoxy-α-D-glucose}}
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{{#set: common name=PSase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
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{{#set: produced by=DTDPGLUCDEHYDRAT-RXN}}
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{{#set: gene associated=Tiso_gene_15914}}
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{{#set: in pathway=PWY-6287|PWY-6475}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-synechocystis|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 19:57, 21 March 2018

Reaction 2.5.1.32-RXN

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):
    • PSase
    • geranylgeranyl-diphosphate geranylgeranyltransferase

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 2 geranylgeranyl diphosphate[c] => 1 diphosphate[c] + 1 prephytoene diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6287, neurosporene biosynthesis: PWY-6287
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6475, trans-lycopene biosynthesis II (plants): PWY-6475
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links




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