Difference between revisions of "Tiso gene 10165"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TYROSINE--TRNA-LIGASE-RXN TYROSINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
 
(Created page with "Category:Gene == Gene Tiso_gene_10165 == * right end position: ** 8281 * transcription direction: ** POSITIVE * left end position: ** 7216 * centisome position: ** 82.4026...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TYROSINE--TRNA-LIGASE-RXN TYROSINE--TRNA-LIGASE-RXN] ==
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== Gene Tiso_gene_10165 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 8281
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* common name:
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* transcription direction:
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** mitochondrial_tyrosyl-trna_synthetase
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** POSITIVE
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** methionyl-trna
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* left end position:
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** ORF
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** 7216
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/6.1.1.1 EC-6.1.1.1]
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** 82.40265   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[NADPH-DEHYDROGENASE-FLAVIN-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[TYR-tRNAs]][c] '''+''' 1 [[TYR]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Charged-TYR-tRNAs]][c] '''+''' 1 [[AMP]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 ATP[c] '''+''' 1 a tRNAtyr[c] '''+''' 1 L-tyrosine[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-tyrosyl-[tRNAtyr][c] '''+''' 1 AMP[c]
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* Reaction: [[RXN-12445]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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== Pathways associated ==
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* [[Tiso_gene_10378]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_12171]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_4175]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_4174]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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== Pathways ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=8281}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10220 10220]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=7216}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02918 R02918]
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{{#set: centisome position=82.40265    }}
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* UNIPROT:
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{{#set: reaction associated=NADPH-DEHYDROGENASE-FLAVIN-RXN|RXN-12445}}
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** [http://www.uniprot.org/uniprot/P28669 P28669]
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** [http://www.uniprot.org/uniprot/P22326 P22326]
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** [http://www.uniprot.org/uniprot/P36421 P36421]
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** [http://www.uniprot.org/uniprot/P41256 P41256]
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** [http://www.uniprot.org/uniprot/O51343 O51343]
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** [http://www.uniprot.org/uniprot/Q9PN27 Q9PN27]
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** [http://www.uniprot.org/uniprot/Q9CIH5 Q9CIH5]
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** [http://www.uniprot.org/uniprot/Q9ZL69 Q9ZL69]
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** [http://www.uniprot.org/uniprot/P47693 P47693]
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** [http://www.uniprot.org/uniprot/Q9ZCZ4 Q9ZCZ4]
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** [http://www.uniprot.org/uniprot/P43836 P43836]
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** [http://www.uniprot.org/uniprot/O83806 O83806]
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** [http://www.uniprot.org/uniprot/Q57834 Q57834]
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** [http://www.uniprot.org/uniprot/P56417 P56417]
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** [http://www.uniprot.org/uniprot/O67632 O67632]
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** [http://www.uniprot.org/uniprot/O58739 O58739]
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** [http://www.uniprot.org/uniprot/Q9WYU8 Q9WYU8]
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** [http://www.uniprot.org/uniprot/O27795 O27795]
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** [http://www.uniprot.org/uniprot/O84065 O84065]
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** [http://www.uniprot.org/uniprot/Q9JVY6 Q9JVY6]
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** [http://www.uniprot.org/uniprot/P48527 P48527]
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** [http://www.uniprot.org/uniprot/Q49900 Q49900]
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** [http://www.uniprot.org/uniprot/P75122 P75122]
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** [http://www.uniprot.org/uniprot/P73141 P73141]
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** [http://www.uniprot.org/uniprot/P73144 P73144]
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** [http://www.uniprot.org/uniprot/P95982 P95982]
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** [http://www.uniprot.org/uniprot/P00952 P00952]
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** [http://www.uniprot.org/uniprot/P04077 P04077]
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** [http://www.uniprot.org/uniprot/P0AGJ9 P0AGJ9]
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** [http://www.uniprot.org/uniprot/P12063 P12063]
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** [http://www.uniprot.org/uniprot/P93363 P93363]
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** [http://www.uniprot.org/uniprot/O14055 O14055]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=mitochondrial_tyrosyl-trna_synthetase}}
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{{#set: common name=methionyl-trna}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-6.1.1.1}}
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{{#set: gene associated=Tiso_gene_10378|Tiso_gene_12171|Tiso_gene_4175|Tiso_gene_4174}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:09, 21 March 2018

Gene Tiso_gene_10165

  • right end position:
    • 8281
  • transcription direction:
    • POSITIVE
  • left end position:
    • 7216
  • centisome position:
    • 82.40265
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10165&oldid=46386"