Difference between revisions of "RXN-10919"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.3-RXN 3.1.26.3-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** low_quality_protein:_...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10919 RXN-10919] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.3-RXN 3.1.26.3-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10919 RXN-10919] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** low_quality_protein:_ribonuclease_3-like
 
−
** mini-ribonuclease_3
 
−
** ORF
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.26.3 EC-3.1.26.3]
+
** [http://enzyme.expasy.org/EC/6.2.1.12 EC-6.2.1.12]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[RNASE-III-MRNA-PROCESSING-SUBSTRATE]][c] '''+''' 2 [[WATER]][c] '''=>''' 2 [[mRNA-Fragments]][c] '''+''' 1 [[RNASE-III-PROCESSING-PRODUCT-MRNA]][c]
+
** 1 [[SINAPATE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[SINAPOYL-COA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 RNase III mRNA processing substrate[c] '''+''' 2 H2O[c] '''=>''' 2 an mRNA fragment[c] '''+''' 1 RNase III processing product mRNA[c]
+
** 1 sinapate[c] '''+''' 1 ATP[c] '''+''' 1 coenzyme A[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 sinapoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10649]]
+
* Gene: [[Tiso_gene_14183]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_12275]]
−
* [[Tiso_gene_10131]]
+
** Source: [[orthology-athaliana]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
−
* [[Tiso_gene_10752]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6282]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10753]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_608]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-athaliana]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
+
* LIGAND-RXN:
−
** [http://www.uniprot.org/uniprot/Q9PM40 Q9PM40]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02221 R02221]
−
** [http://www.uniprot.org/uniprot/P51833 P51833]
+
−
** [http://www.uniprot.org/uniprot/Q9CHD0 Q9CHD0]
+
−
** [http://www.uniprot.org/uniprot/Q9JVD3 Q9JVD3]
+
−
** [http://www.uniprot.org/uniprot/P44441 P44441]
+
−
** [http://www.uniprot.org/uniprot/P0A7Y0 P0A7Y0]
+
−
** [http://www.uniprot.org/uniprot/P09155 P09155]
+
−
** [http://www.uniprot.org/uniprot/Q52698 Q52698]
+
−
** [http://www.uniprot.org/uniprot/Q49034 Q49034]
+
−
** [http://www.uniprot.org/uniprot/O69469 O69469]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=low_quality_protein:_ribonuclease_3-like}}
+
{{#set: ec number=EC-6.2.1.12}}
−
{{#set: common name=mini-ribonuclease_3}}
+
{{#set: gene associated=Tiso_gene_14183|Tiso_gene_12275}}
−
{{#set: common name=ORF}}
+
−
{{#set: ec number=EC-3.1.26.3}}
+
−
{{#set: gene associated=Tiso_gene_10649|Tiso_gene_10131|Tiso_gene_10752|Tiso_gene_6282|Tiso_gene_10753|Tiso_gene_608}}
+
 
{{#set: in pathway=}}
 
{{#set: in pathway=}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
−
{{#set: reconstruction source=in-silico_annotation}}
+
{{#set: reconstruction tool=pantograph}}

Latest revision as of 20:12, 21 March 2018

Reaction RXN-10919

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 sinapate[c] + 1 ATP[c] + 1 coenzyme A[c] => 1 AMP[c] + 1 diphosphate[c] + 1 sinapoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-10919&oldid=46764"