Difference between revisions of "PEPSYNTH-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12377 RXN-12377] == * direction: ** LEFT-TO-RIGHT * common name: ** trna_(guanine_-n1)-methyltr...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPSYNTH-RXN PEPSYNTH-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12377 RXN-12377] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPSYNTH-RXN PEPSYNTH-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** trna_(guanine_-n1)-methyltransferase
 
−
** probable_trna_(guanine_-n_)-dimethyltransferase_1
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.1.216 EC-2.1.1.216]
+
** [http://enzyme.expasy.org/EC/2.7.9.2 EC-2.7.9.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Guanine26-in-tRNA]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[tRNA-Containing-N2-dimethylguanine-26]][c] '''+''' 2 [[ADENOSYL-HOMO-CYS]][c] '''+''' 2 [[PROTON]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[PYRUVATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a guanine26 in tRNA[c] '''+''' 2 S-adenosyl-L-methionine[c] '''=>''' 1 an N2dimethylguanine26 in tRNA[c] '''+''' 2 S-adenosyl-L-homocysteine[c] '''+''' 2 H+[c]
+
** 1 ATP[c] '''+''' 1 pyruvate[c] '''+''' 1 H2O[c] '''=>''' 2 H+[c] '''+''' 1 phosphate[c] '''+''' 1 AMP[c] '''+''' 1 phosphoenolpyruvate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_16307]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** EXPERIMENTAL_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_9360]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** EXPERIMENTAL_ANNOTATION
 
−
***EC-NUMBER
 
 
== Pathways  ==
 
== Pathways  ==
 +
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 +
** '''7''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
 +
** '''11''' reactions found over '''11''' reactions in the full pathway
 +
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 +
** '''12''' reactions found over '''12''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pathwaytools]]
−
*** [[in-silico_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11364 11364]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00199 R00199]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P56070 P56070]
 +
** [http://www.uniprot.org/uniprot/O57830 O57830]
 +
** [http://www.uniprot.org/uniprot/Q9ZMV4 Q9ZMV4]
 +
** [http://www.uniprot.org/uniprot/Q9YEC5 Q9YEC5]
 +
** [http://www.uniprot.org/uniprot/Q57962 Q57962]
 +
** [http://www.uniprot.org/uniprot/O29548 O29548]
 +
** [http://www.uniprot.org/uniprot/Q9V2H7 Q9V2H7]
 +
** [http://www.uniprot.org/uniprot/O27190 O27190]
 +
** [http://www.uniprot.org/uniprot/O67899 O67899]
 +
** [http://www.uniprot.org/uniprot/Q9JVI5 Q9JVI5]
 +
** [http://www.uniprot.org/uniprot/P42850 P42850]
 +
** [http://www.uniprot.org/uniprot/P23538 P23538]
 +
** [http://www.uniprot.org/uniprot/P46893 P46893]
 +
** [http://www.uniprot.org/uniprot/Q55905 Q55905]
 +
** [http://www.uniprot.org/uniprot/O83026 O83026]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=trna_(guanine_-n1)-methyltransferase}}
+
{{#set: ec number=EC-2.7.9.2}}
−
{{#set: common name=probable_trna_(guanine_-n_)-dimethyltransferase_1}}
+
{{#set: in pathway=P23-PWY|PWY-5484|GLUCONEO-PWY|GLYCOLYSIS}}
−
{{#set: ec number=EC-2.1.1.216}}
+
−
{{#set: gene associated=Tiso_gene_16307|Tiso_gene_9360}}
+
−
{{#set: in pathway=}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 20:12, 21 March 2018

Reaction PEPSYNTH-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 pyruvate[c] + 1 H2O[c] => 2 H+[c] + 1 phosphate[c] + 1 AMP[c] + 1 phosphoenolpyruvate[c]

Genes associated with this reaction

Pathways

  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 7 reactions found over 12 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
    • 11 reactions found over 11 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
    • 12 reactions found over 12 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PEPSYNTH-RXN&oldid=46788"