Difference between revisions of "Tiso gene 9435"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ATPSYN-RXN ATPSYN-RXN] == * direction: ** REVERSIBLE * common name: ** v-type_proton_atpase ** ORF...")
 
(Created page with "Category:Gene == Gene Tiso_gene_9435 == * right end position: ** 8586 * transcription direction: ** POSITIVE * left end position: ** 5578 * centisome position: ** 59.63224...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ATPSYN-RXN ATPSYN-RXN] ==
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== Gene Tiso_gene_9435 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 8586
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* common name:
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* transcription direction:
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** v-type_proton_atpase
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** POSITIVE
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** ORF
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* left end position:
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** vacuolar_h+-_sector_c
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** 5578
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** v-type_proton_atpase_catalytic_subunit_a
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* centisome position:
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** vacuolar_h+-atpase_v0_subunits_a
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** 59.63224   
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** atp_synthase_gamma_chloroplastic
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** atp_synthase_gamma_subunit
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** atp_synthase_subunit_mitochondrial
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** ycf35
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** atp_synthase_delta_mitochondrial
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** v-type_proton_atpase_subunit_h
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** v-type_protonatpasesubunitd1
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* ec number:
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** [http://enzyme.expasy.org/EC/3.6.3.14 EC-3.6.3.14]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[F16BDEPHOS-RXN]]
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** 1 [[Pi]][c] '''+''' 4 [[PROTON]][e] '''+''' 1 [[ADP]][c] '''<=>''' 1 [[WATER]][c] '''+''' 3 [[PROTON]][c] '''+''' 1 [[ATP]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 phosphate[c] '''+''' 4 H+[e] '''+''' 1 ADP[c] '''<=>''' 1 H2O[c] '''+''' 3 H+[c] '''+''' 1 ATP[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-athaliana]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[orthology-athaliana]]
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* [[Tiso_gene_11754]]
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** Source: [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-creinhardtii]]
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***EC-NUMBER
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* Reaction: [[SEDOHEPTULOSE-BISPHOSPHATASE-RXN]]
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** EXPERIMENTAL_ANNOTATION
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** Source: [[orthology-athaliana]]
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***EC-NUMBER
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** Source: [[orthology-athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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* [[Tiso_gene_9460]]
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== Pathways associated ==
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** IN-SILICO_ANNOTATION
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* [[GLUCONEO-PWY]]
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***EC-NUMBER
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* [[SUCSYN-PWY]]
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** EXPERIMENTAL_ANNOTATION
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* [[GLYCOLYSIS]]
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***EC-NUMBER
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* [[CALVIN-PWY]]
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* [[Tiso_gene_12618]]
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* [[PWY-5484]]
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** IN-SILICO_ANNOTATION
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* [[P185-PWY]]
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***AUTOMATED-NAME-MATCH
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* [[PWY66-399]]
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* [[Tiso_gene_18105]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_11192]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5307]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_15850]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_1366]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_7213]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10981]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_2798]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_1365]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_17383]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_7215]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_11753]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_11155]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6012]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_6592]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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== Pathways ==
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* [[PWY-7219]], adenosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7219 PWY-7219]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=8586}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20852 20852]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=REVERSIBLE}}
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{{#set: left end position=5578}}
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{{#set: common name=v-type_proton_atpase}}
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{{#set: centisome position=59.63224    }}
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{{#set: common name=ORF}}
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{{#set: reaction associated=F16BDEPHOS-RXN|SEDOHEPTULOSE-BISPHOSPHATASE-RXN}}
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{{#set: common name=vacuolar_h+-_sector_c}}
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{{#set: pathway associated=GLUCONEO-PWY|SUCSYN-PWY|GLYCOLYSIS|CALVIN-PWY|PWY-5484|P185-PWY|PWY66-399}}
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{{#set: common name=v-type_proton_atpase_catalytic_subunit_a}}
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{{#set: common name=vacuolar_h+-atpase_v0_subunits_a}}
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{{#set: common name=atp_synthase_gamma_chloroplastic}}
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{{#set: common name=atp_synthase_gamma_subunit}}
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{{#set: common name=atp_synthase_subunit_mitochondrial}}
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{{#set: common name=ycf35}}
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{{#set: common name=atp_synthase_delta_mitochondrial}}
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{{#set: common name=v-type_proton_atpase_subunit_h}}
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{{#set: common name=v-type_protonatpasesubunitd1}}
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{{#set: ec number=EC-3.6.3.14}}
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{{#set: gene associated=Tiso_gene_11754|Tiso_gene_9460|Tiso_gene_12618|Tiso_gene_18105|Tiso_gene_11192|Tiso_gene_5307|Tiso_gene_15850|Tiso_gene_1366|Tiso_gene_7213|Tiso_gene_10981|Tiso_gene_2798|Tiso_gene_1365|Tiso_gene_17383|Tiso_gene_7215|Tiso_gene_11753|Tiso_gene_11155|Tiso_gene_6012|Tiso_gene_6592}}
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−
{{#set: in pathway=PWY-7219}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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−
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:21, 21 March 2018

Gene Tiso_gene_9435

  • right end position:
    • 8586
  • transcription direction:
    • POSITIVE
  • left end position:
    • 5578
  • centisome position:
    • 59.63224
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_9435&oldid=48056"