Difference between revisions of "PWY-6857"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13302 RXN-13302] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13302 RXN-13302] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857] ==
* direction:
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* taxonomic range:
** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
* ec number:
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* common name:
** [http://enzyme.expasy.org/EC/4.2.1.134 EC-4.2.1.134]
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** retinol biosynthesis
 
* Synonym(s):
 
* Synonym(s):
 +
** vitamin A biosynthesis
 +
** retinal biosynthesis
 +
** retinoid biosynthesis
  
== Reaction Formula ==
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== Reaction(s) found ==
* With identifiers:
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'''3''' reactions found over '''7''' reactions in the full pathway
** 1 [[CPD-14275]][c] '''=>''' 1 [[CPD-14280]][c] '''+''' 1 [[WATER]][c]
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* [[RXN-12575]]
* With common name(s):
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** 13 associated gene(s):
** 1 (3R)-3-hydroxy-arachidoyl-CoA[c] '''=>''' 1 trans-arachido-2-enoyl-CoA[c] '''+''' 1 H2O[c]
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*** [[Tiso_gene_11351]]
 
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*** [[Tiso_gene_1537]]
== Genes associated with this reaction  ==
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*** [[Tiso_gene_4606]]
== Pathways  ==
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*** [[Tiso_gene_17029]]
* [[PWY-7036]], very long chain fatty acid biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7036 PWY-7036]
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*** [[Tiso_gene_1538]]
** '''16''' reactions found over '''16''' reactions in the full pathway
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*** [[Tiso_gene_9429]]
== Reconstruction information  ==
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*** [[Tiso_gene_19778]]
* [[annotation]]:
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*** [[Tiso_gene_4650]]
** [[pathwaytools]]:
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*** [[Tiso_gene_12686]]
*** [[experimental_annotation]]
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*** [[Tiso_gene_10066]]
*** [[in-silico_annotation]]
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*** [[Tiso_gene_16518]]
 +
*** [[Tiso_gene_1922]]
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*** [[Tiso_gene_2556]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-12579]]
 +
** 23 associated gene(s):
 +
*** [[Tiso_gene_2108]]
 +
*** [[Tiso_gene_17612]]
 +
*** [[Tiso_gene_3215]]
 +
*** [[Tiso_gene_17639]]
 +
*** [[Tiso_gene_11437]]
 +
*** [[Tiso_gene_8902]]
 +
*** [[Tiso_gene_17613]]
 +
*** [[Tiso_gene_9140]]
 +
*** [[Tiso_gene_288]]
 +
*** [[Tiso_gene_17614]]
 +
*** [[Tiso_gene_2109]]
 +
*** [[Tiso_gene_14063]]
 +
*** [[Tiso_gene_16817]]
 +
*** [[Tiso_gene_14062]]
 +
*** [[Tiso_gene_17143]]
 +
*** [[Tiso_gene_7915]]
 +
*** [[Tiso_gene_14109]]
 +
*** [[Tiso_gene_5716]]
 +
*** [[Tiso_gene_2983]]
 +
*** [[Tiso_gene_905]]
 +
*** [[Tiso_gene_19184]]
 +
*** [[Tiso_gene_14064]]
 +
*** [[Tiso_gene_906]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-13374]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_13078]]
 +
*** [[Tiso_gene_4653]]
 +
*** [[Tiso_gene_7740]]
 +
*** [[Tiso_gene_13079]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.135-RXN 2.3.1.135-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10841 RXN-10841]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12548 RXN-12548]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12549 RXN-12549]
 
== External links  ==
 
== External links  ==
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-33208}}
{{#set: ec number=EC-4.2.1.134}}
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{{#set: common name=retinol biosynthesis}}
{{#set: in pathway=PWY-7036}}
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{{#set: common name=vitamin A biosynthesis|retinal biosynthesis|retinoid biosynthesis}}
{{#set: reconstruction category=annotation}}
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{{#set: reaction found=3}}
{{#set: reconstruction tool=pathwaytools}}
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{{#set: total reaction=7}}
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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{{#set: completion rate=43.0}}

Latest revision as of 19:25, 21 March 2018

Pathway PWY-6857

  • taxonomic range:
  • common name:
    • retinol biosynthesis
  • Synonym(s):
    • vitamin A biosynthesis
    • retinal biosynthesis
    • retinoid biosynthesis

Reaction(s) found

3 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links