Difference between revisions of "Tiso gene 16727"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GALACTURIDYLYLTRANS-RXN GALACTURIDYLYLTRANS-RXN] == * direction: ** REVERSIBLE * ec number: ** [htt...")
(Created page with "Category:Gene == Gene Tiso_gene_16727 == * right end position: ** 3412 * transcription direction: ** NEGATIVE * left end position: ** 1124 * centisome position: ** 27.0062...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GALACTURIDYLYLTRANS-RXN GALACTURIDYLYLTRANS-RXN] ==
+
== Gene Tiso_gene_16727 ==
−
* direction:
+
* right end position:
−
** REVERSIBLE
+
** 3412
−
* ec number:
+
* transcription direction:
−
** [http://enzyme.expasy.org/EC/2.7.7.12 EC-2.7.7.12]
+
** NEGATIVE
 +
* left end position:
 +
** 1124
 +
* centisome position:
 +
** 27.006248   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN]]
−
** 1 [[GALACTOSE-1P]][c] '''+''' 1 [[CPD-12575]][c] '''<=>''' 1 [[CPD-14553]][c] '''+''' 1 [[GLC-1-P]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 &alpha;-D-galactose 1-phosphate[c] '''+''' 1 UDP-&alpha;-D-glucose[c] '''<=>''' 1 UDP-&alpha;-D-galactose[c] '''+''' 1 &alpha;-D-glucopyranose 1-phosphate[c]
+
** Source: [[orthology-esiliculosus]]
−
 
+
== Pathways associated ==
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Tiso_gene_2435]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
== Pathways  ==
+
−
* [[PWY-6317]], D-galactose degradation I (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY66-422]], D-galactose degradation V (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-422 PWY66-422]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
+
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[esiliculosus]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=3412}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13989 13989]
+
{{#set: transcription direction=NEGATIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=1124}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00955 R00955]
+
{{#set: centisome position=27.006248    }}
−
* UNIPROT:
+
{{#set: reaction associated=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN}}
−
** [http://www.uniprot.org/uniprot/P43424 P43424]
+
−
** [http://www.uniprot.org/uniprot/P31764 P31764]
+
−
** [http://www.uniprot.org/uniprot/P07902 P07902]
+
−
** [http://www.uniprot.org/uniprot/P08431 P08431]
+
−
** [http://www.uniprot.org/uniprot/P09148 P09148]
+
−
** [http://www.uniprot.org/uniprot/P13212 P13212]
+
−
** [http://www.uniprot.org/uniprot/P09580 P09580]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: ec number=EC-2.7.7.12}}
+
−
{{#set: gene associated=Tiso_gene_2435}}
+
−
{{#set: in pathway=PWY-6317|PWY66-422|PWY-6527}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 20:04, 21 March 2018

Gene Tiso_gene_16727

  • right end position:
    • 3412
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 1124
  • centisome position:
    • 27.006248
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_16727&oldid=45632"