Difference between revisions of "UBIQUITIN--PROTEIN-LIGASE-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROXY-BUTANONE-P DIHYDROXY-BUTANONE-P] == * smiles: ** CC(=O)C(O)COP(=O)([O-])[O-] * inchi...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UBIQUITIN--PROTEIN-LIGASE-RXN UBIQUITIN--PROTEIN-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * com...")
 
(2 intermediate revisions by the same user not shown)
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−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROXY-BUTANONE-P DIHYDROXY-BUTANONE-P] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UBIQUITIN--PROTEIN-LIGASE-RXN UBIQUITIN--PROTEIN-LIGASE-RXN] ==
−
* smiles:
+
* direction:
−
** CC(=O)C(O)COP(=O)([O-])[O-]
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=OKYHYXLCTGGOLM-SCSAIBSYSA-L
+
 
* common name:
 
* common name:
−
** 1-deoxy-L-glycero-tetrulose 4-phosphate
+
** ORF
−
* molecular weight:
+
** probable_e3_ubiquitin-protein_ligase_herc4_isoform_x10
−
** 182.069   
+
** peptidyl-prolyl_cis-trans_isomerase-like_2
 +
** low_quality_protein:_e3_ubiquitin-protein_ligase_herc2-like
 +
** e3_ubiquitin_ligase
 +
** zinc_finger_protein
 +
** o_ubiquitin_protein_ligase_e3a
 +
** f-box_only_protein_11
 +
** stackhouse_genomicscaffold_453
 +
** rab_family_gtpase
 +
** ubiquitin-protein_ligase
 +
** ubiquitin_protein_ligase
 +
** secretion-regulating_guanine_nucleotide_exchange
 +
** zinc_n-recogninwd40-like
 +
** auxin_transport_protein_isoform_2
 +
** f-box_lrr-repeat_protein_2
 +
** brca1-associated_ring_domain_protein_1
 +
** ankyrin_repeatdomain-containingprotein-50partial
 +
** ubiquitin-
 +
** phosphoglycerate_mutase_family_protein
 +
** wd_sam_and_u-box_domain_containing_1
 +
** anaphase_promoting_complex_subunit_11
 +
** tnf_receptor-associated_factor
 +
** e3_isg15--protein_ligase_herc6
 +
** hrd1-like_protein
 +
** os06g0159400_protein
 +
** f-box_lrr-repeat_protein
 +
** rni-like_protein
 +
** hect_e3_ubiquitin_ligase
 +
** regulator_of_chromosome_condensation_rcc1
 +
** probable_e3_ubiquitin-protein_ligase_herc4
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.2.1.45 EC-6.2.1.45]
 
* Synonym(s):
 
* Synonym(s):
−
** 3,4-dihydroxy-2-butanone-4-phosphate
 
−
** tetrolose phosphate
 
−
** 3,4-dihydroxy-2-butanone-4-P
 
−
** L-3,4-dihydroxybutan-2-one-4-phosphate
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
== Reaction(s) known to produce the compound ==
+
* With identifiers:
−
* [[DIOHBUTANONEPSYN-RXN]]
+
** 1 [[ATP]][c] '''+''' 1 [[Ubiquitin-activating-protein-E1-L-cys]][c] '''+''' 1 [[Ubiquitin-C-Terminal-Glycine]][c] '''=>''' 1 [[S-ubiquitinyl-UAP-E1-L-cysteine]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
−
== Reaction(s) of unknown directionality ==
+
* With common name(s):
 +
** 1 ATP[c] '''+''' 1 an [E1 ubiquitin-activating enzyme]-L-cysteine[c] '''+''' 1 a [ubiquitin] C-terminal glycine[c] '''=>''' 1 an S-ubiquitinyl-[E1 ubiquitin-activating enzyme]-L-cysteine[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_13243]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_2815]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6946]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1585]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13619]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_557]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4966]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3418]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12309]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2802]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15097]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1589]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_16913]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9662]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5776]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17112]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3210]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3419]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14650]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4460]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1588]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7308]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17517]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1427]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3211]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18824]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_19647]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4569]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1590]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6902]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17030]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_11407]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_5502]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7719]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10888]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12627]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1583]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8636]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17363]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1593]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17194]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_16166]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14182]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4585]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17004]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2226]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_5622]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_16642]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1592]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9666]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17195]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14181]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6910]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8483]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1587]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8801]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1586]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_11148]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14567]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7955]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_558]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3081]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10524]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_4484]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4094]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17423]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1253]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6903]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15624]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17196]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_18752]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7506]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15214]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8048]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12348]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1335]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1591]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14360]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12029]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9575]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4461]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1584]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7779]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_6901]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1582]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3080]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1426]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_8637]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways  ==
 +
* [[PWY-7511]], protein ubiquitylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7511 PWY-7511]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* LIGAND-RXN:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=90658385 90658385]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03876 R03876]
−
* CHEMSPIDER:
+
* UNIPROT:
−
** [http://www.chemspider.com/Chemical-Structure.10739351.html 10739351]
+
** [http://www.uniprot.org/uniprot/P22314 P22314]
−
* CHEBI:
+
** [http://www.uniprot.org/uniprot/P49459 P49459]
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=50606 50606]
+
** [http://www.uniprot.org/uniprot/P62256 P62256]
−
* BIGG : db4p
+
** [http://www.uniprot.org/uniprot/P63146 P63146]
−
* LIGAND-CPD:
+
** [http://www.uniprot.org/uniprot/P28263 P28263]
−
** [http://www.genome.jp/dbget-bin/www_bget?C15556 C15556]
+
** [http://www.uniprot.org/uniprot/Q02053 Q02053]
−
{{#set: smiles=CC(=O)C(O)COP(=O)([O-])[O-]}}
+
** [http://www.uniprot.org/uniprot/P62257 P62257]
−
{{#set: inchi key=InChIKey=OKYHYXLCTGGOLM-SCSAIBSYSA-L}}
+
** [http://www.uniprot.org/uniprot/P61088 P61088]
−
{{#set: common name=1-deoxy-L-glycero-tetrulose 4-phosphate}}
+
** [http://www.uniprot.org/uniprot/P63279 P63279]
−
{{#set: molecular weight=182.069    }}
+
** [http://www.uniprot.org/uniprot/P19812 P19812]
−
{{#set: common name=3,4-dihydroxy-2-butanone-4-phosphate|tetrolose phosphate|3,4-dihydroxy-2-butanone-4-P|L-3,4-dihydroxybutan-2-one-4-phosphate}}
+
** [http://www.uniprot.org/uniprot/P21734 P21734]
−
{{#set: produced by=DIOHBUTANONEPSYN-RXN}}
+
** [http://www.uniprot.org/uniprot/P25869 P25869]
 +
** [http://www.uniprot.org/uniprot/P31254 P31254]
 +
** [http://www.uniprot.org/uniprot/P15731 P15731]
 +
** [http://www.uniprot.org/uniprot/P15732 P15732]
 +
** [http://www.uniprot.org/uniprot/P29340 P29340]
 +
** [http://www.uniprot.org/uniprot/P35133 P35133]
 +
** [http://www.uniprot.org/uniprot/P35134 P35134]
 +
** [http://www.uniprot.org/uniprot/P35132 P35132]
 +
** [http://www.uniprot.org/uniprot/P33296 P33296]
 +
** [http://www.uniprot.org/uniprot/P22515 P22515]
 +
** [http://www.uniprot.org/uniprot/P39940 P39940]
 +
** [http://www.uniprot.org/uniprot/P42748 P42748]
 +
** [http://www.uniprot.org/uniprot/P42750 P42750]
 +
** [http://www.uniprot.org/uniprot/P42749 P42749]
 +
** [http://www.uniprot.org/uniprot/P42747 P42747]
 +
** [http://www.uniprot.org/uniprot/P50623 P50623]
 +
** [http://www.uniprot.org/uniprot/Q42973 Q42973]
 +
** [http://www.uniprot.org/uniprot/P40984 P40984]
 +
** [http://www.uniprot.org/uniprot/Q92462 Q92462]
 +
** [http://www.uniprot.org/uniprot/Q42540 Q42540]
 +
** [http://www.uniprot.org/uniprot/P93028 P93028]
 +
** [http://www.uniprot.org/uniprot/P93393 P93393]
 +
** [http://www.uniprot.org/uniprot/P31252 P31252]
 +
** [http://www.uniprot.org/uniprot/P52486 P52486]
 +
** [http://www.uniprot.org/uniprot/Q9YGM6 Q9YGM6]
 +
** [http://www.uniprot.org/uniprot/O42646 O42646]
 +
** [http://www.uniprot.org/uniprot/O15979 O15979]
 +
** [http://www.uniprot.org/uniprot/P23566 P23566]
 +
** [http://www.uniprot.org/uniprot/Q96PU5 Q96PU5]
 +
** [http://www.uniprot.org/uniprot/P27949 P27949]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=probable_e3_ubiquitin-protein_ligase_herc4_isoform_x10}}
 +
{{#set: common name=peptidyl-prolyl_cis-trans_isomerase-like_2}}
 +
{{#set: common name=low_quality_protein:_e3_ubiquitin-protein_ligase_herc2-like}}
 +
{{#set: common name=e3_ubiquitin_ligase}}
 +
{{#set: common name=zinc_finger_protein}}
 +
{{#set: common name=o_ubiquitin_protein_ligase_e3a}}
 +
{{#set: common name=f-box_only_protein_11}}
 +
{{#set: common name=stackhouse_genomicscaffold_453}}
 +
{{#set: common name=rab_family_gtpase}}
 +
{{#set: common name=ubiquitin-protein_ligase}}
 +
{{#set: common name=ubiquitin_protein_ligase}}
 +
{{#set: common name=secretion-regulating_guanine_nucleotide_exchange}}
 +
{{#set: common name=zinc_n-recogninwd40-like}}
 +
{{#set: common name=auxin_transport_protein_isoform_2}}
 +
{{#set: common name=f-box_lrr-repeat_protein_2}}
 +
{{#set: common name=brca1-associated_ring_domain_protein_1}}
 +
{{#set: common name=ankyrin_repeatdomain-containingprotein-50partial}}
 +
{{#set: common name=ubiquitin-}}
 +
{{#set: common name=phosphoglycerate_mutase_family_protein}}
 +
{{#set: common name=wd_sam_and_u-box_domain_containing_1}}
 +
{{#set: common name=anaphase_promoting_complex_subunit_11}}
 +
{{#set: common name=tnf_receptor-associated_factor}}
 +
{{#set: common name=e3_isg15--protein_ligase_herc6}}
 +
{{#set: common name=hrd1-like_protein}}
 +
{{#set: common name=os06g0159400_protein}}
 +
{{#set: common name=f-box_lrr-repeat_protein}}
 +
{{#set: common name=rni-like_protein}}
 +
{{#set: common name=hect_e3_ubiquitin_ligase}}
 +
{{#set: common name=regulator_of_chromosome_condensation_rcc1}}
 +
{{#set: common name=probable_e3_ubiquitin-protein_ligase_herc4}}
 +
{{#set: ec number=EC-6.2.1.45}}
 +
{{#set: gene associated=Tiso_gene_13243|Tiso_gene_2815|Tiso_gene_6946|Tiso_gene_1585|Tiso_gene_13619|Tiso_gene_557|Tiso_gene_4966|Tiso_gene_3418|Tiso_gene_12309|Tiso_gene_2802|Tiso_gene_15097|Tiso_gene_1589|Tiso_gene_16913|Tiso_gene_9662|Tiso_gene_5776|Tiso_gene_17112|Tiso_gene_3210|Tiso_gene_3419|Tiso_gene_14650|Tiso_gene_4460|Tiso_gene_1588|Tiso_gene_7308|Tiso_gene_17517|Tiso_gene_1427|Tiso_gene_3211|Tiso_gene_18824|Tiso_gene_19647|Tiso_gene_4569|Tiso_gene_1590|Tiso_gene_6902|Tiso_gene_17030|Tiso_gene_11407|Tiso_gene_5502|Tiso_gene_7719|Tiso_gene_10888|Tiso_gene_12627|Tiso_gene_1583|Tiso_gene_8636|Tiso_gene_17363|Tiso_gene_1593|Tiso_gene_17194|Tiso_gene_16166|Tiso_gene_14182|Tiso_gene_4585|Tiso_gene_17004|Tiso_gene_2226|Tiso_gene_5622|Tiso_gene_16642|Tiso_gene_1592|Tiso_gene_9666|Tiso_gene_17195|Tiso_gene_14181|Tiso_gene_6910|Tiso_gene_8483|Tiso_gene_1587|Tiso_gene_8801|Tiso_gene_1586|Tiso_gene_11148|Tiso_gene_14567|Tiso_gene_7955|Tiso_gene_558|Tiso_gene_3081|Tiso_gene_10524|Tiso_gene_4484|Tiso_gene_4094|Tiso_gene_17423|Tiso_gene_1253|Tiso_gene_6903|Tiso_gene_15624|Tiso_gene_17196|Tiso_gene_18752|Tiso_gene_7506|Tiso_gene_15214|Tiso_gene_8048|Tiso_gene_12348|Tiso_gene_1335|Tiso_gene_1591|Tiso_gene_14360|Tiso_gene_12029|Tiso_gene_9575|Tiso_gene_4461|Tiso_gene_1584|Tiso_gene_7779|Tiso_gene_6901|Tiso_gene_1582|Tiso_gene_3080|Tiso_gene_1426|Tiso_gene_8637}}
 +
{{#set: in pathway=PWY-7511}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:10, 21 March 2018

Reaction UBIQUITIN--PROTEIN-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • probable_e3_ubiquitin-protein_ligase_herc4_isoform_x10
    • peptidyl-prolyl_cis-trans_isomerase-like_2
    • low_quality_protein:_e3_ubiquitin-protein_ligase_herc2-like
    • e3_ubiquitin_ligase
    • zinc_finger_protein
    • o_ubiquitin_protein_ligase_e3a
    • f-box_only_protein_11
    • stackhouse_genomicscaffold_453
    • rab_family_gtpase
    • ubiquitin-protein_ligase
    • ubiquitin_protein_ligase
    • secretion-regulating_guanine_nucleotide_exchange
    • zinc_n-recogninwd40-like
    • auxin_transport_protein_isoform_2
    • f-box_lrr-repeat_protein_2
    • brca1-associated_ring_domain_protein_1
    • ankyrin_repeatdomain-containingprotein-50partial
    • ubiquitin-
    • phosphoglycerate_mutase_family_protein
    • wd_sam_and_u-box_domain_containing_1
    • anaphase_promoting_complex_subunit_11
    • tnf_receptor-associated_factor
    • e3_isg15--protein_ligase_herc6
    • hrd1-like_protein
    • os06g0159400_protein
    • f-box_lrr-repeat_protein
    • rni-like_protein
    • hect_e3_ubiquitin_ligase
    • regulator_of_chromosome_condensation_rcc1
    • probable_e3_ubiquitin-protein_ligase_herc4
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7511, protein ubiquitylation: PWY-7511
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links




















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