Difference between revisions of "RXN-9951"

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(Created page with "Category:Gene == Gene Tiso_gene_13394 == * left end position: ** 235 * transcription direction: ** POSITIVE * right end position: ** 6220 * centisome position: ** 3.716002...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9951 RXN-9951] == * direction: ** REVERSIBLE * common name: ** isocitrate dehydrogenase (NADP+)...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_13394 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9951 RXN-9951] ==
−
* left end position:
+
* direction:
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** 235
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** REVERSIBLE
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* transcription direction:
+
* common name:
−
** POSITIVE
+
** isocitrate dehydrogenase (NADP+)
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* right end position:
+
** ORF
−
** 6220
+
−
* centisome position:
+
−
** 3.7160025   
+
 
* Synonym(s):
 
* Synonym(s):
 +
** oxalosuccinate decarboxylase
 +
** oxalsuccinic decarboxylase
 +
** isocitrate (NADP) dehydrogenase
 +
** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 +
** NADP-specific isocitrate dehydrogenase
 +
** NADP-linked isocitrate dehydrogenase
 +
** NADP isocitric dehydrogenase
 +
** isocitrate dehydrogenase (NADP-dependent)
 +
** NADP-dependent isocitric dehydrogenase
 +
** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
 +
** NADP+-linked isocitrate dehydrogenase
 +
** IDH (ambiguous)
 +
** dual-cofactor-specific isocitrate dehydrogenase
 +
** NADP+-ICDH
 +
** NADP+-IDH
 +
** IDP
 +
** IDP1
 +
** IDP2
 +
** IDP3
  
−
== Reactions associated ==
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== Reaction Formula ==
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* [[2.3.1.165-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[THREO-DS-ISO-CITRATE]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[OXALO-SUCCINATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c]
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***ec-number
+
* With common name(s):
−
* [[3-HYDROXYDECANOYL-ACP-DEHYDR-RXN]]
+
** 1 D-threo-isocitrate[c] '''+''' 1 NADP+[c] '''<=>''' 1 oxalosuccinate[c] '''+''' 1 H+[c] '''+''' 1 NADPH[c]
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** in-silico_annotation
+
 
−
***ec-number
+
== Genes associated with this reaction  ==
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* [[3-OXOACYL-ACP-REDUCT-RXN]]
+
Genes have been associated with this reaction based on different elements listed below.
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** in-silico_annotation
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* Gene: [[Tiso_gene_10809]]
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***ec-number
+
** Source: [[annotation-in-silico_annotation]]
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* [[3-OXOACYL-ACP-SYNTH-BASE-RXN]]
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*** Assignment: EC-NUMBER
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** in-silico_annotation
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** Source: [[annotation-experimental_annotation]]
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***ec-number
+
*** Assignment: EC-NUMBER
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* [[3-OXOACYL-ACP-SYNTH-RXN]]
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* Gene: [[Tiso_gene_18262]]
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** in-silico_annotation
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** Source: [[annotation-experimental_annotation]]
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***ec-number
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*** Assignment: EC-NUMBER
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* [[4.2.1.58-RXN]]
+
** Source: [[orthology-esiliculosus]]
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** in-silico_annotation
+
== Pathways ==
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***ec-number
+
== Reconstruction information  ==
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* [[4.2.1.59-RXN]]
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* Category: [[orthology]]
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** in-silico_annotation
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** Source: [[orthology-esiliculosus]]
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***ec-number
+
*** Tool: [[pantograph]]
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* [[4.2.1.61-RXN]]
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* Category: [[annotation]]
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** in-silico_annotation
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** Source: [[annotation-experimental_annotation]]
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***ec-number
+
*** Tool: [[pathwaytools]]
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* [[ACP-S-ACETYLTRANSFER-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** in-silico_annotation
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*** Tool: [[pathwaytools]]
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***ec-number
+
−
* [[ACYLCOASYN-RXN]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[ENOYL-ACP-REDUCT-NADPH-RXN]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[FATTY-ACYL-COA-SYNTHASE-RXN]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[LINOLENOYL-RXN]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[MALONYL-COA-ACP-TRANSACYL-RXN]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[R223-RXN]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-12184]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-12560]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-12978]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-13008]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-13279]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-13290]]
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−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-13614]]
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−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-16380]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-16389]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-16393]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-16401]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-16402]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-16415]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-16418]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-5901]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-7904]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9514]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9515]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9518]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9520]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9521]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9524]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9526]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9528]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9530]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9532]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9533]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9534]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9535]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9536]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9537]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9538]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9540]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9542]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9623]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9633]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9634]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9644]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9648]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9650]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9651]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9652]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9653]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9654]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9655]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN-9673]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN0-7238]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN0-7239]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN0-7248]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN3O-1803]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN3O-5293]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN3O-5304]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN66-469]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN66-477]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN66-480]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN66-483]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[RXN66-484]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
* [[TRANS-RXN0-623]]
+
−
** in-silico_annotation
+
−
***ec-number
+
−
== Pathways associated ==
+
−
* [[PWY-6920]]
+
−
* [[PWY-7664]]
+
−
* [[P221-PWY]]
+
−
* [[PWY-7388]]
+
−
* [[PWY-321]]
+
−
* [[PWY-5972]]
+
−
* [[PWY-5970]]
+
−
* [[PWY-5971]]
+
−
* [[PWY-7033]]
+
−
* [[PWY-5676]]
+
−
* [[PWY-5136]]
+
−
* [[PWY66-389]]
+
−
* [[PWY-7288]]
+
−
* [[PWY-4381]]
+
−
* [[PWY-7490]]
+
−
* [[PWY-6733]]
+
−
* [[PWY-7094]]
+
−
* [[PWY66-391]]
+
−
* [[PWY0-862]]
+
−
* [[PWY-5994]]
+
−
* [[PWY3O-355]]
+
−
* [[FAO-PWY]]
+
−
* [[PWY-1121]]
+
−
* [[PWY-6873]]
+
−
* [[PWY-5965]]
+
−
* [[PWY-5966]]
+
−
* [[PWY-5143]]
+
−
* [[FASYN-INITIAL-PWY]]
+
−
* [[PWY-5885]]
+
−
* [[PWY-7724]]
+
−
* [[PWY-5741]]
+
−
* [[FASYN-ELONG-PWY]]
+
−
* [[PWY-6001]]
+
−
* [[PWY-7216]]
+
−
* [[PWY-5147]]
+
−
* [[PWY-7049]]
+
−
* [[PWY-6799]]
+
−
* [[PWY-6000]]
+
−
* [[PWY66-387]]
+
−
* [[PWY-5989]]
+
−
* [[PWY1-3]]
+
−
* [[PWY-6803]]
+
−
* [[PWY66-388]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=235}}
+
* RHEA:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25588 25588]
−
{{#set: right end position=6220}}
+
* LIGAND-RXN:
−
{{#set: centisome position=3.7160025    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01899 R01899]
−
{{#set: reaction associated=2.3.1.165-RXN|3-HYDROXYDECANOYL-ACP-DEHYDR-RXN|3-OXOACYL-ACP-REDUCT-RXN|3-OXOACYL-ACP-SYNTH-BASE-RXN|3-OXOACYL-ACP-SYNTH-RXN|4.2.1.58-RXN|4.2.1.59-RXN|4.2.1.61-RXN|ACP-S-ACETYLTRANSFER-RXN|ACYLCOASYN-RXN|ENOYL-ACP-REDUCT-NADPH-RXN|FATTY-ACYL-COA-SYNTHASE-RXN|LINOLENOYL-RXN|MALONYL-COA-ACP-TRANSACYL-RXN|PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN|R223-RXN|RXN-12184|RXN-12560|RXN-12978|RXN-13008|RXN-13279|RXN-13290|RXN-13614|RXN-16380|RXN-16389|RXN-16393|RXN-16401|RXN-16402|RXN-16415|RXN-16418|RXN-5901|RXN-7904|RXN-9514|RXN-9515|RXN-9518|RXN-9520|RXN-9521|RXN-9524|RXN-9526|RXN-9528|RXN-9530|RXN-9532|RXN-9533|RXN-9534|RXN-9535|RXN-9536|RXN-9537|RXN-9538|RXN-9540|RXN-9542|RXN-9623|RXN-9633|RXN-9634|RXN-9644|RXN-9648|RXN-9650|RXN-9651|RXN-9652|RXN-9653|RXN-9654|RXN-9655|RXN-9673|RXN0-7238|RXN0-7239|RXN0-7248|RXN3O-1803|RXN3O-5293|RXN3O-5304|RXN66-469|RXN66-477|RXN66-480|RXN66-483|RXN66-484|TRANS-RXN0-623}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: pathway associated=PWY-6920|PWY-7664|P221-PWY|PWY-7388|PWY-321|PWY-5972|PWY-5970|PWY-5971|PWY-7033|PWY-5676|PWY-5136|PWY66-389|PWY-7288|PWY-4381|PWY-7490|PWY-6733|PWY-7094|PWY66-391|PWY0-862|PWY-5994|PWY3O-355|FAO-PWY|PWY-1121|PWY-6873|PWY-5965|PWY-5966|PWY-5143|FASYN-INITIAL-PWY|PWY-5885|PWY-7724|PWY-5741|FASYN-ELONG-PWY|PWY-6001|PWY-7216|PWY-5147|PWY-7049|PWY-6799|PWY-6000|PWY66-387|PWY-5989|PWY1-3|PWY-6803|PWY66-388}}
+
{{#set: common name=isocitrate dehydrogenase (NADP+)}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=oxalosuccinate decarboxylase|oxalsuccinic decarboxylase|isocitrate (NADP) dehydrogenase|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|NADP-specific isocitrate dehydrogenase|NADP-linked isocitrate dehydrogenase|NADP isocitric dehydrogenase|isocitrate dehydrogenase (NADP-dependent)|NADP-dependent isocitric dehydrogenase|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|NADP+-linked isocitrate dehydrogenase|IDH (ambiguous)|dual-cofactor-specific isocitrate dehydrogenase|NADP+-ICDH|NADP+-IDH|IDP|IDP1|IDP2|IDP3}}
 +
{{#set: gene associated=Tiso_gene_10809|Tiso_gene_18262}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:14, 21 March 2018

Reaction RXN-9951

  • direction:
    • REVERSIBLE
  • common name:
    • isocitrate dehydrogenase (NADP+)
    • ORF
  • Synonym(s):
    • oxalosuccinate decarboxylase
    • oxalsuccinic decarboxylase
    • isocitrate (NADP) dehydrogenase
    • isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
    • NADP-specific isocitrate dehydrogenase
    • NADP-linked isocitrate dehydrogenase
    • NADP isocitric dehydrogenase
    • isocitrate dehydrogenase (NADP-dependent)
    • NADP-dependent isocitric dehydrogenase
    • triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
    • NADP+-linked isocitrate dehydrogenase
    • IDH (ambiguous)
    • dual-cofactor-specific isocitrate dehydrogenase
    • NADP+-ICDH
    • NADP+-IDH
    • IDP
    • IDP1
    • IDP2
    • IDP3

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-9951&oldid=47134"