Difference between revisions of "DXPREDISOM-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHORIBOSYL-AMP PHOSPHORIBOSYL-AMP] == * smiles: ** C(C4(C(C(C(N3(C(C2(=C(N(C1(C(C(C(O1)COP(...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXPREDISOM-RXN DXPREDISOM-RXN] == * direction: ** REVERSIBLE * common name: ** 1-deoxy-d-xylulose_5...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHORIBOSYL-AMP PHOSPHORIBOSYL-AMP] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXPREDISOM-RXN DXPREDISOM-RXN] ==
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* smiles:
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* direction:
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** C(C4(C(C(C(N3(C(C2(=C(N(C1(C(C(C(O1)COP([O-])(=O)[O-])O)O))C=N2)N=C3))=N))O4)O)O))OP([O-])([O-])=O
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** REVERSIBLE
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* inchi key:
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** InChIKey=RTQMRTSPTLIIHM-KEOHHSTQSA-J
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* common name:
 
* common name:
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** 1-(5-phospho-β-D-ribosyl)-AMP
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** 1-deoxy-d-xylulose_5-phosphate_reductoisomerase
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* molecular weight:
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* ec number:
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** 555.288   
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** [http://enzyme.expasy.org/EC/1.1.1.267 EC-1.1.1.267]
 
* Synonym(s):
 
* Synonym(s):
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** 1-(5-phosphoribosyl)-AMP
 
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** phosphoribosyl-AMP
 
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** 5-phosphoribosyl-AMP
 
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** N-(5-phospho-D-ribosyl)-AMP
 
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** N-(5'-phospho-D-ribosyl)-AMP
 
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** N1-(5-phospho-D-ribosyl)-AMP
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[HISTCYCLOHYD-RXN]]
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* With identifiers:
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* [[PRACH]]
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** 1 [[2-C-METHYL-D-ERYTHRITOL-4-PHOSPHATE]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[DEOXYXYLULOSE-5P]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[HISTPRATPHYD-RXN]]
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** 1 2-C-methyl-D-erythritol 4-phosphate[c] '''+''' 1 NADP+[c] '''<=>''' 1 NADPH[c] '''+''' 1 H+[c] '''+''' 1 1-deoxy-D-xylulose 5-phosphate[c]
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* [[PRADP]]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_15169]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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== Pathways  ==
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* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
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** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* LIGAND-CPD:
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* RHEA:
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** [http://www.genome.jp/dbget-bin/www_bget?C02741 C02741]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13717 13717]
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* CHEBI:
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* LIGAND-RXN:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=59457 59457]
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** [http://www.genome.jp/dbget-bin/www_bget?R05688 R05688]
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* BIGG : prbamp
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{{#set: direction=REVERSIBLE}}
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* PUBCHEM:
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{{#set: common name=1-deoxy-d-xylulose_5-phosphate_reductoisomerase}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=45480652 45480652]
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{{#set: ec number=EC-1.1.1.267}}
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* HMDB : HMDB12276
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{{#set: gene associated=Tiso_gene_15169}}
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{{#set: smiles=C(C4(C(C(C(N3(C(C2(=C(N(C1(C(C(C(O1)COP([O-])(=O)[O-])O)O))C=N2)N=C3))=N))O4)O)O))OP([O-])([O-])=O}}
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{{#set: in pathway=NONMEVIPP-PWY|PWY-7560}}
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{{#set: inchi key=InChIKey=RTQMRTSPTLIIHM-KEOHHSTQSA-J}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: common name=1-(5-phospho-&beta;-D-ribosyl)-AMP}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: molecular weight=555.288    }}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: common name=1-(5-phosphoribosyl)-AMP|phosphoribosyl-AMP|5-phosphoribosyl-AMP|N-(5-phospho-D-ribosyl)-AMP|N-(5'-phospho-D-ribosyl)-AMP|N1-(5-phospho-D-ribosyl)-AMP}}
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{{#set: consumed by=HISTCYCLOHYD-RXN|PRACH}}
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{{#set: produced by=HISTPRATPHYD-RXN|PRADP}}
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Latest revision as of 20:21, 21 March 2018

Reaction DXPREDISOM-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • 1-deoxy-d-xylulose_5-phosphate_reductoisomerase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • NONMEVIPP-PWY, methylerythritol phosphate pathway I: NONMEVIPP-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7560, methylerythritol phosphate pathway II: PWY-7560
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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