Difference between revisions of "RXN-7985"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18204 RXN-18204] == * direction: ** REVERSIBLE * common name: ** 3-isopropylmalate dehydrogenas...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7985 RXN-7985] == * direction: ** LEFT-TO-RIGHT * common name: ** violaxanthin de-epoxidase **...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18204 RXN-18204] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7985 RXN-7985] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 3-isopropylmalate dehydrogenase
+
** violaxanthin de-epoxidase
 +
** violaxanthin_de-_chloroplast
 +
** violaxanthin_de-epoxidase
 
* Synonym(s):
 
* Synonym(s):
 +
** VDE
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPDQT-38]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-19489]][c]
+
** 1 [[ASCORBATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD1F-131]][c] '''=>''' 1 [[L-DEHYDRO-ASCORBATE]][c] '''+''' 1 [[CPD1F-130]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 3-(5'-methylthio)pentylmalate[c] '''+''' 1 NAD+[c] '''<=>''' 1 NADH[c] '''+''' 1 H+[c] '''+''' 1 3-isopropyl-8-(methylthio)-2-oxooctanoate[c]
+
** 1 L-ascorbate[c] '''+''' 1 H+[c] '''+''' 1 antheraxanthin[c] '''=>''' 1 L-dehydro-ascorbate[c] '''+''' 1 zeaxanthin[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_2920]]
+
* Gene: [[Tiso_gene_5666]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1275]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_16523]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWYQT-4450]], aliphatic glucosinolate biosynthesis, side chain elongation cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4450 PWYQT-4450]
+
* [[PWY-5945]], zeaxanthin, antheraxanthin and violaxanthin interconversion: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5945 PWY-5945]
−
** '''10''' reactions found over '''30''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
+
* RHEA:
−
{{#set: common name=3-isopropylmalate dehydrogenase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21800 21800]
−
{{#set: gene associated=Tiso_gene_2920}}
+
* LIGAND-RXN:
−
{{#set: in pathway=PWYQT-4450}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R07179 R07179]
−
{{#set: reconstruction category=annotation}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: reconstruction source=annotation-experimental_annotation}}
+
{{#set: common name=violaxanthin de-epoxidase}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: common name=violaxanthin_de-_chloroplast}}
 +
{{#set: common name=violaxanthin_de-epoxidase}}
 +
{{#set: common name=VDE}}
 +
{{#set: gene associated=Tiso_gene_5666|Tiso_gene_1275|Tiso_gene_16523}}
 +
{{#set: in pathway=PWY-5945}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:10, 21 March 2018

Reaction RXN-7985

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • violaxanthin de-epoxidase
    • violaxanthin_de-_chloroplast
    • violaxanthin_de-epoxidase
  • Synonym(s):
    • VDE

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5945, zeaxanthin, antheraxanthin and violaxanthin interconversion: PWY-5945
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links






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