Difference between revisions of "RXN-14025"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-12...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14025 RXN-14025] == * direction: ** LEFT-TO-RIGHT * common name: ** 5_deoxy_cytosolic_type_c_pr...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14025 RXN-14025] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** purine nucleobases degradation II (anaerobic)
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** 5_deoxy_cytosolic_type_c_protein
 +
** 5_-nucleotidase
 +
** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
 +
** ORF
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
 
* Synonym(s):
 
* Synonym(s):
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** purine fermentation
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''7''' reactions found over '''24''' reactions in the full pathway
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* With identifiers:
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* [[GLYOHMETRANS-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[UMP]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[URIDINE]][c]
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** 4 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_16153]]
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** 1 H2O[c] '''+''' 1 UMP[c] '''=>''' 1 phosphate[c] '''+''' 1 uridine[c]
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*** [[Tiso_gene_16154]]
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*** [[Tiso_gene_18652]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_7776]]
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Genes have been associated with this reaction based on different elements listed below.
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** 4 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_14434]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** Assignment: EC-NUMBER
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_6640]]
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*** [[orthology-esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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* [[GUANINE-DEAMINASE-RXN]]
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* Gene: [[Tiso_gene_13929]]
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** 1 associated gene(s):
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_12280]]
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*** Assignment: EC-NUMBER
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** 2 reconstruction source(s) associated:
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_6988]]
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*** [[orthology-creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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* [[METHENYLTHFCYCLOHYDRO-RXN]]
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*** Assignment: EC-NUMBER
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** 0 associated gene:
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** Source: [[orthology-esiliculosus]]
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** 1 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_14246]]
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*** [[manual-primary_network]]
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** Source: [[annotation-in-silico_annotation]]
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* [[METHYLENETHFDEHYDROG-NADP-RXN]]
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*** Assignment: EC-NUMBER
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** 2 associated gene(s):
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* Gene: [[Tiso_gene_5911]]
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*** [[Tiso_gene_432]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_6004]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** 3 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_14435]]
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*** [[manual-primary_network]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** [[orthology-esiliculosus]]
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== Pathways  ==
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* [[RXN-15124]]
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* [[PWY-7185]], UTP and CTP dephosphorylation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7185 PWY-7185]
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** 0 associated gene:
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** '''5''' reactions found over '''5''' reactions in the full pathway
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** 2 reconstruction source(s) associated:
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* [[PWY-7821]], tunicamycin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7821 PWY-7821]
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*** [[annotation-experimental_annotation]]
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** '''2''' reactions found over '''9''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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* [[RXN-15127]]
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* Category: [[orthology]]
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** 0 associated gene:
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** Source: [[orthology-esiliculosus]]
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** 2 reconstruction source(s) associated:
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*** Tool: [[pantograph]]
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*** [[annotation-in-silico_annotation]]
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* Category: [[annotation]]
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*** [[annotation-experimental_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN0-901]]
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*** Tool: [[pathwaytools]]
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** 1 associated gene(s):
+
−
*** [[Tiso_gene_11775]]
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−
** 2 reconstruction source(s) associated:
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−
*** [[orthology-athaliana]]
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−
*** [[annotation-in-silico_annotation]]
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−
== Reaction(s) not found ==
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−
* [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.2-RXN 1.2.1.2-RXN]
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−
* [http://metacyc.org/META/NEW-IMAGE?object=4.3.1.4-RXN 4.3.1.4-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=ACETATEKIN-RXN ACETATEKIN-RXN]
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−
* [http://metacyc.org/META/NEW-IMAGE?object=FORMYLTHFDEFORMYL-RXN FORMYLTHFDEFORMYL-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE-FORMIMINOTRANSFERASE-RXN GLYCINE-FORMIMINOTRANSFERASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PHOSACETYLTRANS-RXN PHOSACETYLTRANS-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRUFLAVREDUCT-RXN PYRUFLAVREDUCT-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R127-RXN R127-RXN]
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−
* [http://metacyc.org/META/NEW-IMAGE?object=R128-RXN R128-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R13-RXN R13-RXN]
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−
* [http://metacyc.org/META/NEW-IMAGE?object=R62-RXN R62-RXN]
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−
* [http://metacyc.org/META/NEW-IMAGE?object=R63-RXN R63-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15125 RXN-15125]
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−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8751 RXN-8751]
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−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8752 RXN-8752]
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−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8753 RXN-8753]
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−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8754 RXN-8754]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-1239}}
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* RHEA:
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{{#set: common name=purine nucleobases degradation II (anaerobic)}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29360 29360]
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{{#set: common name=purine fermentation}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction found=7}}
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{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
−
{{#set: total reaction=24}}
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{{#set: common name=5_-nucleotidase}}
−
{{#set: completion rate=29.0}}
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{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-3.1.3.5}}
 +
{{#set: gene associated=Tiso_gene_14434|Tiso_gene_6640|Tiso_gene_13929|Tiso_gene_6988|Tiso_gene_14246|Tiso_gene_5911|Tiso_gene_14435}}
 +
{{#set: in pathway=PWY-7185|PWY-7821}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:12, 21 March 2018

Reaction RXN-14025

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 5_deoxy_cytosolic_type_c_protein
    • 5_-nucleotidase
    • probable_cytosolic_imp-gmp_specific_5_-nucleotidase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 UMP[c] => 1 phosphate[c] + 1 uridine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7185, UTP and CTP dephosphorylation I: PWY-7185
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7821, tunicamycin biosynthesis: PWY-7821
    • 2 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-14025&oldid=40173"