Difference between revisions of "Tiso gene 5857"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-3701 RXN-3701] == * direction: ** REVERSIBLE * common name: ** rab_proteins_geranylgeranyltrans...")
(Created page with "Category:Gene == Gene Tiso_gene_5857 == * right end position: ** 2702 * transcription direction: ** NEGATIVE * left end position: ** 56 * centisome position: ** 0.43583158...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-3701 RXN-3701] ==
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== Gene Tiso_gene_5857 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 2702
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* common name:
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* transcription direction:
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** rab_proteins_geranylgeranyltransferase_component_a_2
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** NEGATIVE
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** protein_geranylgeranyltransferase_type_ii
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* left end position:
−
* ec number:
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** 56
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** [http://enzyme.expasy.org/EC/2.5.1.60 EC-2.5.1.60]
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.5.1.59 EC-2.5.1.59]
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** 0.43583158   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN]]
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** 1 [[PROT-CYS]][c] '''+''' 1 [[GERANYLGERANYL-PP]][c] '''<=>''' 1 [[PPI]][c] '''+''' 1 [[S-GERANYLGERANYL-PROTEIN]][c]
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** Source: [[orthology-athaliana]]
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* With common name(s):
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** Source: [[orthology-creinhardtii]]
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** 1 a [protein]-L-cysteine[c] '''+''' 1 geranylgeranyl diphosphate[c] '''<=>''' 1 diphosphate[c] '''+''' 1 a [protein]-S-geranylgeranyl-L-cysteine[c]
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* Reaction: [[HACD5]]
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** Source: [[orthology-creinhardtii]]
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== Genes associated with this reaction  ==
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* Reaction: [[HACD5m]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[orthology-creinhardtii]]
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* [[Tiso_gene_18785]]
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* Reaction: [[HBCHL]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-creinhardtii]]
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***EC-NUMBER
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* Reaction: [[HBCHLm]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* [[Tiso_gene_18627]]
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* Reaction: [[HBCO]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-creinhardtii]]
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***EC-NUMBER
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* Reaction: [[HMNOS]]
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* [[Tiso_gene_18628]]
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** Source: [[orthology-creinhardtii]]
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** IN-SILICO_ANNOTATION
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* Reaction: [[METHYLACYLYLCOA-HYDROXY-RXN]]
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***EC-NUMBER
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** Source: [[orthology-athaliana]]
−
== Pathways  ==
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−
== Reconstruction information  ==
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−
* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
−
*** Tool: [[pantograph]]
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* Reaction: [[OHACYL-COA-DEHYDROG-RXN]]
−
* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[PEROXID-RXN]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-10698]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-10702]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-10703]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-11245]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-11662]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[RXN-11667]]
 +
** Source: [[orthology-athaliana]]
 +
* Reaction: [[RXN-12490]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[RXN-12507]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[RXN-12570]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[RXN-12705]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-12750]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-14240]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-14266]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-14271]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[RXN-14275]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-15288]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-16133]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17777]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17781]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17786]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17790]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17793]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17794]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17797]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17798]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-2425]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-6383]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[RXN-8635]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-905]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN0-2044]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[TIGLYLCOA-HYDROXY-RXN]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways associated ==
 +
* [[PWY-6920]]
 +
* [[P162-PWY]]
 +
* [[PWY-5177]]
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* [[PWY-6583]]
 +
* [[VALDEG-PWY]]
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* [[PWY-6883]]
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* [[PWY-7656]]
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* [[PWY-5136]]
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* [[PWY-7778]]
 +
* [[PWY-7779]]
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* [[PWY-7574]]
 +
* [[PWY-7094]]
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* [[PWY-7654]]
 +
* [[P3-PWY]]
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* [[PWY66-391]]
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* [[PWY-5789]]
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* [[PWY-5461]]
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* [[FAO-PWY]]
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* [[CENTFERM-PWY]]
 +
* [[PWY-6945]]
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* [[PWY0-321]]
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* [[PWY-5743]]
 +
* [[ILEUDEG-PWY]]
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* [[PWY-5744]]
 +
* [[PWY-7007]]
 +
* [[PWY-6435]]
 +
* [[PWY-7214]]
 +
* [[PWY-7216]]
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* [[PWY-1361]]
 +
* [[PWY-5109]]
 +
* [[PWY-7445]]
 +
* [[PWY-6946]]
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* [[PWY-81]]
 +
* [[PWY-6944]]
 +
* [[PWY-735]]
 +
* [[PWY-7401]]
 +
* [[PWY-6863]]
 +
* [[PWY-3941]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
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{{#set: right end position=2702}}
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{{#set: common name=rab_proteins_geranylgeranyltransferase_component_a_2}}
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{{#set: transcription direction=NEGATIVE}}
−
{{#set: common name=protein_geranylgeranyltransferase_type_ii}}
+
{{#set: left end position=56}}
−
{{#set: ec number=EC-2.5.1.60}}
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{{#set: centisome position=0.43583158    }}
−
{{#set: ec number=EC-2.5.1.59}}
+
{{#set: reaction associated=3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN|HACD5|HACD5m|HBCHL|HBCHLm|HBCO|HMNOS|METHYLACYLYLCOA-HYDROXY-RXN|OHACYL-COA-DEHYDROG-RXN|PEROXID-RXN|RXN-10698|RXN-10702|RXN-10703|RXN-11245|RXN-11662|RXN-11667|RXN-12490|RXN-12507|RXN-12570|RXN-12705|RXN-12750|RXN-14240|RXN-14266|RXN-14271|RXN-14275|RXN-15288|RXN-16133|RXN-17777|RXN-17781|RXN-17786|RXN-17790|RXN-17793|RXN-17794|RXN-17797|RXN-17798|RXN-2425|RXN-6383|RXN-8635|RXN-905|RXN0-2044|TIGLYLCOA-HYDROXY-RXN}}
−
{{#set: gene associated=Tiso_gene_18785|Tiso_gene_18627|Tiso_gene_18628}}
+
{{#set: pathway associated=PWY-6920|P162-PWY|PWY-5177|PWY-6583|VALDEG-PWY|PWY-6883|PWY-7656|PWY-5136|PWY-7778|PWY-7779|PWY-7574|PWY-7094|PWY-7654|P3-PWY|PWY66-391|PWY-5789|PWY-5461|FAO-PWY|CENTFERM-PWY|PWY-6945|PWY0-321|PWY-5743|ILEUDEG-PWY|PWY-5744|PWY-7007|PWY-6435|PWY-7214|PWY-7216|PWY-1361|PWY-5109|PWY-7445|PWY-6946|PWY-81|PWY-6944|PWY-735|PWY-7401|PWY-6863|PWY-3941}}
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:14, 21 March 2018

Gene Tiso_gene_5857

  • right end position:
    • 2702
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 56
  • centisome position:
    • 0.43583158
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5857&oldid=40388"