Difference between revisions of "GPPSYN-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_11511 == * left end position: ** 4438 * transcription direction: ** NEGATIVE * right end position: ** 7734 * centisome position: ** 57.2128...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPSYN-RXN GPPSYN-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/2...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_11511 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPSYN-RXN GPPSYN-RXN] ==
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* left end position:
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* direction:
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** 4438
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** REVERSIBLE
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* transcription direction:
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* ec number:
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** NEGATIVE
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** [http://enzyme.expasy.org/EC/2.5.1.1 EC-2.5.1.1]
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* right end position:
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** 7734
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−
* centisome position:
+
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** 57.21284   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[GLUTAMATE-SYNTHASE-NADH-RXN]]
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* With identifiers:
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** [[pantograph]]-[[synechocystis]]
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** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[CPD-4211]][c] '''<=>''' 1 [[PPI]][c] '''+''' 1 [[GERANYL-PP]][c]
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* [[GLUTAMATESYN-RXN]]
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* With common name(s):
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** experimental_annotation
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** 1 isopentenyl diphosphate[c] '''+''' 1 dimethylallyl diphosphate[c] '''<=>''' 1 diphosphate[c] '''+''' 1 geranyl diphosphate[c]
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***ec-number
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* [[GLUTAMIN-RXN]]
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== Genes associated with this reaction  ==
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** experimental_annotation
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Genes have been associated with this reaction based on different elements listed below.
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***ec-number
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* Gene: [[Tiso_gene_19542]]
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* [[GLUTDEHYD-RXN]]
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** Source: [[orthology-esiliculosus]]
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** experimental_annotation
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* Gene: [[Tiso_gene_18201]]
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***ec-number
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** Source: [[orthology-creinhardtii]]
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== Pathways associated ==
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* Gene: [[Tiso_gene_16284]]
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* [[GLUTAMINEFUM-PWY]]
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** Source: [[orthology-athaliana]]
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* [[GLUTAMINDEG-PWY]]
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** Source: [[orthology-synechocystis]]
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* [[PWY490-3]]
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** Source: [[orthology-esiliculosus]]
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* [[GLUTSYN-PWY]]
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** Source: [[orthology-creinhardtii]]
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* [[PWY-5913]]
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* Gene: [[Tiso_gene_2848]]
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* [[PWY-5675]]
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** Source: [[orthology-creinhardtii]]
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* [[GLUGLNSYN-PWY]]
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* Gene: [[Tiso_gene_1035]]
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* [[GLUTSYNIII-PWY]]
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** Source: [[orthology-esiliculosus]]
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* [[PWY-6963]]
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* Gene: [[Tiso_gene_4719]]
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* [[CITRULBIO-PWY]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_11582]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_13582]]
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** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_10317]]
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways ==
 +
* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7709]], (3R)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7709 PWY-7709]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
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** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7182]], linalool biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7182 PWY-7182]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7141]], (3S)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7141 PWY-7141]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5122]], geranyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5122 PWY-5122]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6383 PWY-6383]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7659]], viridicatumtoxin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7659 PWY-7659]
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7410]], ipsdienol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7410 PWY-7410]
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** '''1''' reactions found over '''4''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=4438}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22408 22408]
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{{#set: right end position=7734}}
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* LIGAND-RXN:
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{{#set: centisome position=57.21284    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R01658 R01658]
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{{#set: reaction associated=GLUTAMATE-SYNTHASE-NADH-RXN|GLUTAMATESYN-RXN|GLUTAMIN-RXN|GLUTDEHYD-RXN}}
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* UNIPROT:
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{{#set: pathway associated=GLUTAMINEFUM-PWY|GLUTAMINDEG-PWY|PWY490-3|GLUTSYN-PWY|PWY-5913|PWY-5675|GLUGLNSYN-PWY|GLUTSYNIII-PWY|PWY-6963|CITRULBIO-PWY}}
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** [http://www.uniprot.org/uniprot/P08524 P08524]
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** [http://www.uniprot.org/uniprot/P05369 P05369]
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** [http://www.uniprot.org/uniprot/P14324 P14324]
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** [http://www.uniprot.org/uniprot/P46376 P46376]
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** [http://www.uniprot.org/uniprot/Q45220 Q45220]
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** [http://www.uniprot.org/uniprot/P49350 P49350]
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** [http://www.uniprot.org/uniprot/Q50891 Q50891]
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** [http://www.uniprot.org/uniprot/P49349 P49349]
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** [http://www.uniprot.org/uniprot/Q09152 Q09152]
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** [http://www.uniprot.org/uniprot/P49351 P49351]
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** [http://www.uniprot.org/uniprot/P49352 P49352]
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** [http://www.uniprot.org/uniprot/Q43315 Q43315]
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** [http://www.uniprot.org/uniprot/O24241 O24241]
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** [http://www.uniprot.org/uniprot/O24242 O24242]
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** [http://www.uniprot.org/uniprot/Q92334 Q92334]
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** [http://www.uniprot.org/uniprot/Q92218 Q92218]
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** [http://www.uniprot.org/uniprot/Q92235 Q92235]
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** [http://www.uniprot.org/uniprot/Q92250 Q92250]
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** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
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** [http://www.uniprot.org/uniprot/P49353 P49353]
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** [http://www.uniprot.org/uniprot/O04882 O04882]
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** [http://www.uniprot.org/uniprot/O65004 O65004]
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{{#set: direction=REVERSIBLE}}
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{{#set: ec number=EC-2.5.1.1}}
 +
{{#set: gene associated=Tiso_gene_19542|Tiso_gene_18201|Tiso_gene_16284|Tiso_gene_2848|Tiso_gene_1035|Tiso_gene_4719|Tiso_gene_11582|Tiso_gene_13582|Tiso_gene_10317}}
 +
{{#set: in pathway=PWY-7736|PWY-6859|PWY-7709|PWY-7102|PWY-7182|PWY-7141|PWY-5123|PWY-5122|PWY-6383|PWY-7659|PWY-7410}}
 +
{{#set: reconstruction category=orthology|manual}}
 +
{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|manual-primary_network|orthology-esiliculosus|orthology-synechocystis}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 19:18, 21 March 2018

Reaction GPPSYN-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 isopentenyl diphosphate[c] + 1 dimethylallyl diphosphate[c] <=> 1 diphosphate[c] + 1 geranyl diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7736, stellatic acid biosynthesis: PWY-7736
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-6859, all-trans-farnesol biosynthesis: PWY-6859
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7709, (3R)-linalool biosynthesis: PWY-7709
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7102, bisabolene biosynthesis (engineered): PWY-7102
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7182, linalool biosynthesis I: PWY-7182
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7141, (3S)-linalool biosynthesis: PWY-7141
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5123, trans, trans-farnesyl diphosphate biosynthesis: PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5122, geranyl diphosphate biosynthesis: PWY-5122
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6383, mono-trans, poly-cis decaprenyl phosphate biosynthesis: PWY-6383
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7659, viridicatumtoxin biosynthesis: PWY-7659
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7410, ipsdienol biosynthesis: PWY-7410
    • 1 reactions found over 4 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=GPPSYN-RXN&oldid=40721"