Difference between revisions of "PWY-181"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2381 RXN0-2381] == * direction: ** REVERSIBLE * common name: ** tryptophan_synthase_(alpha_bet...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-38254 TAX-382...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2381 RXN0-2381] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-38254 TAX-38254]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2830 TAX-2830]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-543769 TAX-543769]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33634 TAX-33634]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3027 TAX-3027]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-33682]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2763 TAX-2763]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** tryptophan_synthase_(alpha_beta_chains)
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** photorespiration
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* ec number:
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** [http://enzyme.expasy.org/EC/4.1.2.8 EC-4.1.2.8]
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* Synonym(s):
 
* Synonym(s):
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** C2 photorespiratory carbon oxidation cycle
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** PCO cycle
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''9''' reactions in the full pathway
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** 1 [[INDOLE-3-GLYCEROL-P]][c] '''<=>''' 1 [[INDOLE]][c] '''+''' 1 [[GAP]][c]
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* [[GLY3KIN-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''<=>''' 1 indole[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c]
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*** [[Tiso_gene_3016]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-creinhardtii]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_17207]]
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* [[GLYCERATE-DEHYDROGENASE-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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** 0 associated gene:
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* [[Tiso_gene_4604]]
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** 1 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[manual-primary_network]]
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***EC-NUMBER
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* [[GLYCINE-AMINOTRANSFERASE-RXN]]
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** EXPERIMENTAL_ANNOTATION
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** 3 associated gene(s):
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***EC-NUMBER
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*** [[Tiso_gene_5959]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_20557]]
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== Pathways  ==
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*** [[Tiso_gene_1695]]
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* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
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** 1 reconstruction source(s) associated:
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** '''6''' reactions found over '''6''' reactions in the full pathway
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*** [[orthology-creinhardtii]]
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* [[PWY-6949]], DIBOA-glucoside biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6949 PWY-6949]
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* [[GLYOHMETRANS-RXN]]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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** 4 associated gene(s):
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== Reconstruction information  ==
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*** [[Tiso_gene_16153]]
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* Category: [[orthology]]
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*** [[Tiso_gene_7776]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_18652]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_16154]]
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* Category: [[annotation]]
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** 4 reconstruction source(s) associated:
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** Source: [[annotation-experimental_annotation]]
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*** [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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*** [[manual-primary_network]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** [[orthology-esiliculosus]]
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* [[GPH-RXN]]
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** 5 associated gene(s):
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*** [[Tiso_gene_18052]]
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*** [[Tiso_gene_18053]]
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*** [[Tiso_gene_18054]]
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*** [[Tiso_gene_15498]]
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*** [[Tiso_gene_8723]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=GCVMULTI-RXN GCVMULTI-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-961 RXN-961]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-969 RXN-969]
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* [http://metacyc.org/META/NEW-IMAGE?object=SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN]
 
== External links  ==
 
== External links  ==
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* RHEA:
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* METACYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14081 14081]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=PWY-181 PWY-181]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-38254}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02340 R02340]
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{{#set: taxonomic range=TAX-2830}}
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{{#set: direction=REVERSIBLE}}
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{{#set: taxonomic range=TAX-543769}}
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{{#set: common name=tryptophan_synthase_(alpha_beta_chains)}}
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{{#set: taxonomic range=TAX-33634}}
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{{#set: ec number=EC-4.1.2.8}}
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{{#set: taxonomic range=TAX-3027}}
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{{#set: gene associated=Tiso_gene_17207|Tiso_gene_4604}}
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{{#set: taxonomic range=TAX-33682}}
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{{#set: in pathway=TRPSYN-PWY|PWY-6949}}
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{{#set: taxonomic range=TAX-2763}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: taxonomic range=TAX-1117}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: common name=photorespiration}}
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{{#set: common name=C2 photorespiratory carbon oxidation cycle|PCO cycle}}
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{{#set: reaction found=5}}
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{{#set: total reaction=9}}
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{{#set: completion rate=56.0}}

Latest revision as of 19:25, 21 March 2018

Pathway PWY-181

Reaction(s) found

5 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links








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