Difference between revisions of "PROTEIN-ARGININE-DEIMINASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1441 RXN0-1441] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: ** [http:/...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTEIN-ARGININE-DEIMINASE-RXN PROTEIN-ARGININE-DEIMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * c...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1441 RXN0-1441] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTEIN-ARGININE-DEIMINASE-RXN PROTEIN-ARGININE-DEIMINASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ORF
+
** peptidylarginine_deiminase_(modular_protein)
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.6.1.53 EC-3.6.1.53]
+
** [http://enzyme.expasy.org/EC/3.5.3.15 EC-3.5.3.15]
−
** [http://enzyme.expasy.org/EC/3.6.1.13 EC-3.6.1.13]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[ADENOSINE_DIPHOSPHATE_RIBOSE]][c] '''=>''' 2 [[PROTON]][c] '''+''' 1 [[CPD-15317]][c] '''+''' 1 [[AMP]][c]
+
** 1 [[Protein-L-Arginines]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTEIN-L-CITRULLINE]][c] '''+''' 1 [[AMMONIUM]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 ADP-D-ribose[c] '''=>''' 2 H+[c] '''+''' 1 D-ribofuranose 5-phosphate[c] '''+''' 1 AMP[c]
+
** 1 a [protein]-L-arginine[c] '''+''' 1 H2O[c] '''=>''' 1 a [protein]-L-citrulline[c] '''+''' 1 ammonium[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_15496]]
+
* Gene: [[Tiso_gene_16344]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_17630]]
+
* Gene: [[Tiso_gene_19262]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_17632]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_7189]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_9180]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_2747]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-4921]], protein citrullination: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4921 PWY-4921]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10412 10412]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01054 R01054]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02621 R02621]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q08642 Q08642]
 +
** [http://www.uniprot.org/uniprot/P20717 P20717]
 +
** [http://www.uniprot.org/uniprot/P70708 P70708]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ORF}}
+
{{#set: common name=peptidylarginine_deiminase_(modular_protein)}}
−
{{#set: ec number=EC-3.6.1.53}}
+
{{#set: ec number=EC-3.5.3.15}}
−
{{#set: ec number=EC-3.6.1.13}}
+
{{#set: gene associated=Tiso_gene_16344|Tiso_gene_19262}}
−
{{#set: gene associated=Tiso_gene_15496|Tiso_gene_17630|Tiso_gene_17632|Tiso_gene_7189|Tiso_gene_9180|Tiso_gene_2747}}
+
{{#set: in pathway=PWY-4921}}
−
{{#set: in pathway=}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:26, 21 March 2018

Reaction PROTEIN-ARGININE-DEIMINASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • peptidylarginine_deiminase_(modular_protein)
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-4921, protein citrullination: PWY-4921
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links





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