Difference between revisions of "Tiso gene 1922"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5408 RXN0-5408] == * direction: ** LEFT-TO-RIGHT * common name: ** myo-inositol-1(or_4)-monoph...")
(Created page with "Category:Gene == Gene Tiso_gene_1922 == * right end position: ** 6777 * transcription direction: ** POSITIVE * left end position: ** 4021 * centisome position: ** 18.95803...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5408 RXN0-5408] ==
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== Gene Tiso_gene_1922 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 6777
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* common name:
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* transcription direction:
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** myo-inositol-1(or_4)-monophosphatase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/3.1.3.25 EC-3.1.3.25]
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** 4021
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* centisome position:
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** 18.958038   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[2.5.1.64-RXN]]
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** 1 [[D-MYO-INOSITOL-1-MONOPHOSPHATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[MYO-INOSITOL]][c] '''+''' 1 [[Pi]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 1D-myo-inositol 1-monophosphate[c] '''+''' 1 H2O[c] '''=>''' 1 myo-inositol[c] '''+''' 1 phosphate[c]
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* Reaction: [[3.1.1.64-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[CARBOXYLESTERASE-RXN]]
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* [[Tiso_gene_12601]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: ec-number
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* [[Tiso_gene_2527]]
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* Reaction: [[RETINYL-PALMITATE-ESTERASE-RXN]]
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***AUTOMATED-NAME-MATCH
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*** Assignment: ec-number
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** EXPERIMENTAL_ANNOTATION
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* Reaction: [[RXN-10711]]
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***AUTOMATED-NAME-MATCH
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_14713]]
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*** Assignment: ec-number
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** [[pantograph]]-[[creinhardtii]]
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* Reaction: [[RXN-10767]]
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* [[Tiso_gene_11614]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** Assignment: ec-number
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[RXN-12252]]
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_4855]]
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*** Assignment: ec-number
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[RXN-12575]]
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* [[Tiso_gene_10754]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: ec-number
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== Pathways  ==
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* Reaction: [[RXN-9310]]
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* [[PWY-4702]], phytate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4702 PWY-4702]
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** Source: [[annotation-in-silico_annotation]]
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** '''2''' reactions found over '''14''' reactions in the full pathway
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*** Assignment: ec-number
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== Reconstruction information  ==
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* Reaction: [[RXNQT-4366]]
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-5837]]
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* [[PWY-6857]]
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* [[PWY-6303]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=6777}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27670 27670]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=4021}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01185 R01185]
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{{#set: centisome position=18.958038    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=2.5.1.64-RXN|3.1.1.64-RXN|CARBOXYLESTERASE-RXN|RETINYL-PALMITATE-ESTERASE-RXN|RXN-10711|RXN-10767|RXN-12252|RXN-12575|RXN-9310|RXNQT-4366}}
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{{#set: common name=myo-inositol-1(or_4)-monophosphatase}}
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{{#set: pathway associated=PWY-5837|PWY-6857|PWY-6303}}
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{{#set: ec number=EC-3.1.3.25}}
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{{#set: gene associated=Tiso_gene_12601|Tiso_gene_2527|Tiso_gene_14713|Tiso_gene_11614|Tiso_gene_4855|Tiso_gene_10754}}
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{{#set: in pathway=PWY-4702}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus|annotation-experimental_annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:31, 21 March 2018

Gene Tiso_gene_1922

  • right end position:
    • 6777
  • transcription direction:
    • POSITIVE
  • left end position:
    • 4021
  • centisome position:
    • 18.958038
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1922&oldid=42118"