Difference between revisions of "Tiso gene 2386"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE--TRNA-LIGASE-RXN ASPARTATE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
(Created page with "Category:Gene == Gene Tiso_gene_2386 == * right end position: ** 6336 * transcription direction: ** NEGATIVE * left end position: ** 5150 * centisome position: ** 24.06429...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE--TRNA-LIGASE-RXN ASPARTATE--TRNA-LIGASE-RXN] ==
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== Gene Tiso_gene_2386 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 6336
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* common name:
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* transcription direction:
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** aspartyl-trna_synthetase
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/6.1.1.12 EC-6.1.1.12]
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** 5150
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* centisome position:
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** 24.064297   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-11832]]
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** 1 [[ASP-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Charged-ASP-tRNAs]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 tRNAasp[c] '''+''' 1 ATP[c] '''+''' 1 L-aspartate[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 an L-aspartyl-[tRNAasp][c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_17185]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_7126]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_13081]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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* Reaction: [[RXN-12002]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7913]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-7205]]
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* [[PWY-7197]]
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* [[PWY-7176]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=6336}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19649 19649]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=5150}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05577 R05577]
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{{#set: centisome position=24.064297    }}
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* UNIPROT:
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{{#set: reaction associated=RXN-11832|RXN-12002|RXN-7913}}
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** [http://www.uniprot.org/uniprot/P56459 P56459]
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{{#set: pathway associated=PWY-7205|PWY-7197|PWY-7176}}
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** [http://www.uniprot.org/uniprot/O26328 O26328]
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** [http://www.uniprot.org/uniprot/O83950 O83950]
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** [http://www.uniprot.org/uniprot/Q58950 Q58950]
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** [http://www.uniprot.org/uniprot/Q9ZLL9 Q9ZLL9]
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** [http://www.uniprot.org/uniprot/O32038 O32038]
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** [http://www.uniprot.org/uniprot/O67589 O67589]
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** [http://www.uniprot.org/uniprot/P43817 P43817]
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** [http://www.uniprot.org/uniprot/O51402 O51402]
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** [http://www.uniprot.org/uniprot/Q9CE80 Q9CE80]
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** [http://www.uniprot.org/uniprot/Q9ZE17 Q9ZE17]
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** [http://www.uniprot.org/uniprot/Q9X1F4 Q9X1F4]
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** [http://www.uniprot.org/uniprot/Q9JT23 Q9JT23]
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** [http://www.uniprot.org/uniprot/O58776 O58776]
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** [http://www.uniprot.org/uniprot/O84546 O84546]
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** [http://www.uniprot.org/uniprot/Q9Z7P2 Q9Z7P2]
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** [http://www.uniprot.org/uniprot/Q9PHM7 Q9PHM7]
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** [http://www.uniprot.org/uniprot/P47282 P47282]
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** [http://www.uniprot.org/uniprot/Q51422 Q51422]
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** [http://www.uniprot.org/uniprot/Q03577 Q03577]
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** [http://www.uniprot.org/uniprot/P36429 P36429]
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** [http://www.uniprot.org/uniprot/P75068 P75068]
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** [http://www.uniprot.org/uniprot/P73851 P73851]
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** [http://www.uniprot.org/uniprot/Q48979 Q48979]
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** [http://www.uniprot.org/uniprot/Q49028 Q49028]
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** [http://www.uniprot.org/uniprot/P04802 P04802]
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** [http://www.uniprot.org/uniprot/P15179 P15179]
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** [http://www.uniprot.org/uniprot/P21889 P21889]
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** [http://www.uniprot.org/uniprot/P14868 P14868]
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** [http://www.uniprot.org/uniprot/P15178 P15178]
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** [http://www.uniprot.org/uniprot/O81892 O81892]
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** [http://www.uniprot.org/uniprot/O74407 O74407]
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** [http://www.uniprot.org/uniprot/O07683 O07683]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=aspartyl-trna_synthetase}}
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{{#set: ec number=EC-6.1.1.12}}
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{{#set: gene associated=Tiso_gene_17185|Tiso_gene_7126|Tiso_gene_13081}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:37, 21 March 2018

Gene Tiso_gene_2386

  • right end position:
    • 6336
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 5150
  • centisome position:
    • 24.064297
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_2386&oldid=42817"