Difference between revisions of "ASPARTATE--TRNA-LIGASE-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7219 PWY-7219] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE--TRNA-LIGASE-RXN ASPARTATE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7219 PWY-7219] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE--TRNA-LIGASE-RXN ASPARTATE--TRNA-LIGASE-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
+
** LEFT-TO-RIGHT
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
+
 
* common name:
 
* common name:
−
** adenosine ribonucleotides de novo biosynthesis
+
** aspartyl-trna_synthetase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.1.1.12 EC-6.1.1.12]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''4''' reactions found over '''4''' reactions in the full pathway
+
* With identifiers:
−
* [[ADENYL-KIN-RXN]]
+
** 1 [[ASP-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Charged-ASP-tRNAs]][c] '''+''' 1 [[AMP]][c]
−
** 17 associated gene(s):
+
* With common name(s):
−
*** [[Tiso_gene_13477]]
+
** 1 tRNAasp[c] '''+''' 1 ATP[c] '''+''' 1 L-aspartate[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-aspartyl-[tRNAasp][c] '''+''' 1 AMP[c]
−
*** [[Tiso_gene_5839]]
+
 
−
*** [[Tiso_gene_5387]]
+
== Genes associated with this reaction  ==
−
*** [[Tiso_gene_805]]
+
Genes have been associated with this reaction based on different elements listed below.
−
*** [[Tiso_gene_694]]
+
* Gene: [[Tiso_gene_13081]]
−
*** [[Tiso_gene_19734]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[Tiso_gene_1453]]
+
*** Assignment: EC-NUMBER
−
*** [[Tiso_gene_3353]]
+
** Source: [[annotation-experimental_annotation]]
−
*** [[Tiso_gene_14116]]
+
*** Assignment: EC-NUMBER
−
*** [[Tiso_gene_19036]]
+
** Source: [[orthology-esiliculosus]]
−
*** [[Tiso_gene_8576]]
+
* Gene: [[Tiso_gene_17185]]
−
*** [[Tiso_gene_12257]]
+
** Source: [[annotation-experimental_annotation]]
−
*** [[Tiso_gene_4816]]
+
*** Assignment: EC-NUMBER
−
*** [[Tiso_gene_12256]]
+
** Source: [[orthology-esiliculosus]]
−
*** [[Tiso_gene_5388]]
+
* Gene: [[Tiso_gene_7126]]
−
*** [[Tiso_gene_5837]]
+
** Source: [[orthology-esiliculosus]]
−
*** [[Tiso_gene_5081]]
+
== Pathways  ==
−
** 7 reconstruction source(s) associated:
+
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
−
*** [[annotation-experimental_annotation]]
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
*** [[orthology-esiliculosus]]
+
== Reconstruction information  ==
−
*** [[annotation-in-silico_annotation]]
+
* Category: [[orthology]]
−
*** [[orthology-athaliana]]
+
** Source: [[orthology-esiliculosus]]
−
*** [[orthology-synechocystis]]
+
*** Tool: [[pantograph]]
−
*** [[manual-primary_network]]
+
* Category: [[annotation]]
−
*** [[orthology-creinhardtii]]
+
** Source: [[annotation-experimental_annotation]]
−
* [[ADENYLOSUCCINATE-SYNTHASE-RXN]]
+
*** Tool: [[pathwaytools]]
−
** 2 associated gene(s):
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[Tiso_gene_6453]]
+
*** Tool: [[pathwaytools]]
−
*** [[Tiso_gene_743]]
+
−
** 6 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-synechocystis]]
+
−
*** [[manual-primary_network]]
+
−
*** [[orthology-creinhardtii]]
+
−
* [[AMPSYN-RXN]]
+
−
** 0 associated gene:
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[manual-primary_network]]
+
−
*** [[annotation-experimental_annotation]]
+
−
* [[ATPSYN-RXN]]
+
−
** 18 associated gene(s):
+
−
*** [[Tiso_gene_7215]]
+
−
*** [[Tiso_gene_18105]]
+
−
*** [[Tiso_gene_12618]]
+
−
*** [[Tiso_gene_6012]]
+
−
*** [[Tiso_gene_11754]]
+
−
*** [[Tiso_gene_9460]]
+
−
*** [[Tiso_gene_11192]]
+
−
*** [[Tiso_gene_7213]]
+
−
*** [[Tiso_gene_2798]]
+
−
*** [[Tiso_gene_11155]]
+
−
*** [[Tiso_gene_5307]]
+
−
*** [[Tiso_gene_1366]]
+
−
*** [[Tiso_gene_6592]]
+
−
*** [[Tiso_gene_17383]]
+
−
*** [[Tiso_gene_10981]]
+
−
*** [[Tiso_gene_15850]]
+
−
*** [[Tiso_gene_1365]]
+
−
*** [[Tiso_gene_11753]]
+
−
** 4 reconstruction source(s) associated:
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[manual-primary_network]]
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
== Reaction(s) not found ==
+
 
== External links  ==
 
== External links  ==
−
* ECOCYC:
+
* RHEA:
−
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-7219 PWY-7219]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19649 19649]
−
{{#set: taxonomic range=TAX-2759}}
+
* LIGAND-RXN:
−
{{#set: taxonomic range=TAX-2157}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R05577 R05577]
−
{{#set: taxonomic range=TAX-2}}
+
* UNIPROT:
−
{{#set: common name=adenosine ribonucleotides de novo biosynthesis}}
+
** [http://www.uniprot.org/uniprot/P56459 P56459]
−
{{#set: reaction found=4}}
+
** [http://www.uniprot.org/uniprot/O26328 O26328]
−
{{#set: total reaction=4}}
+
** [http://www.uniprot.org/uniprot/O83950 O83950]
−
{{#set: completion rate=100.0}}
+
** [http://www.uniprot.org/uniprot/Q58950 Q58950]
 +
** [http://www.uniprot.org/uniprot/Q9ZLL9 Q9ZLL9]
 +
** [http://www.uniprot.org/uniprot/O32038 O32038]
 +
** [http://www.uniprot.org/uniprot/O67589 O67589]
 +
** [http://www.uniprot.org/uniprot/P43817 P43817]
 +
** [http://www.uniprot.org/uniprot/O51402 O51402]
 +
** [http://www.uniprot.org/uniprot/Q9CE80 Q9CE80]
 +
** [http://www.uniprot.org/uniprot/Q9ZE17 Q9ZE17]
 +
** [http://www.uniprot.org/uniprot/Q9X1F4 Q9X1F4]
 +
** [http://www.uniprot.org/uniprot/Q9JT23 Q9JT23]
 +
** [http://www.uniprot.org/uniprot/O58776 O58776]
 +
** [http://www.uniprot.org/uniprot/O84546 O84546]
 +
** [http://www.uniprot.org/uniprot/Q9Z7P2 Q9Z7P2]
 +
** [http://www.uniprot.org/uniprot/Q9PHM7 Q9PHM7]
 +
** [http://www.uniprot.org/uniprot/P47282 P47282]
 +
** [http://www.uniprot.org/uniprot/Q51422 Q51422]
 +
** [http://www.uniprot.org/uniprot/Q03577 Q03577]
 +
** [http://www.uniprot.org/uniprot/P36429 P36429]
 +
** [http://www.uniprot.org/uniprot/P75068 P75068]
 +
** [http://www.uniprot.org/uniprot/P73851 P73851]
 +
** [http://www.uniprot.org/uniprot/Q48979 Q48979]
 +
** [http://www.uniprot.org/uniprot/Q49028 Q49028]
 +
** [http://www.uniprot.org/uniprot/P04802 P04802]
 +
** [http://www.uniprot.org/uniprot/P15179 P15179]
 +
** [http://www.uniprot.org/uniprot/P21889 P21889]
 +
** [http://www.uniprot.org/uniprot/P14868 P14868]
 +
** [http://www.uniprot.org/uniprot/P15178 P15178]
 +
** [http://www.uniprot.org/uniprot/O81892 O81892]
 +
** [http://www.uniprot.org/uniprot/O74407 O74407]
 +
** [http://www.uniprot.org/uniprot/O07683 O07683]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=aspartyl-trna_synthetase}}
 +
{{#set: ec number=EC-6.1.1.12}}
 +
{{#set: gene associated=Tiso_gene_13081|Tiso_gene_17185|Tiso_gene_7126}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:37, 21 March 2018

Reaction ASPARTATE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • aspartyl-trna_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 tRNAasp[c] + 1 ATP[c] + 1 L-aspartate[c] => 1 diphosphate[c] + 1 an L-aspartyl-[tRNAasp][c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=ASPARTATE--TRNA-LIGASE-RXN&oldid=42832"