Difference between revisions of "ASPARTATE--TRNA-LIGASE-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7219 PWY-7219] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE--TRNA-LIGASE-RXN ASPARTATE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7219 PWY-7219] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE--TRNA-LIGASE-RXN ASPARTATE--TRNA-LIGASE-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
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** adenosine ribonucleotides de novo biosynthesis
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** aspartyl-trna_synthetase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.1.1.12 EC-6.1.1.12]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
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== Reaction Formula ==
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'''4''' reactions found over '''4''' reactions in the full pathway
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* With identifiers:
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* [[ADENYL-KIN-RXN]]
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** 1 [[ASP-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Charged-ASP-tRNAs]][c] '''+''' 1 [[AMP]][c]
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** 17 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_13477]]
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** 1 tRNAasp[c] '''+''' 1 ATP[c] '''+''' 1 L-aspartate[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-aspartyl-[tRNAasp][c] '''+''' 1 AMP[c]
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*** [[Tiso_gene_5839]]
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*** [[Tiso_gene_5387]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_805]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_694]]
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* Gene: [[Tiso_gene_13081]]
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*** [[Tiso_gene_19734]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_1453]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_3353]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_14116]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_19036]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_8576]]
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* Gene: [[Tiso_gene_17185]]
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*** [[Tiso_gene_12257]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_4816]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_12256]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_5388]]
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* Gene: [[Tiso_gene_7126]]
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*** [[Tiso_gene_5837]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_5081]]
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== Pathways  ==
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** 7 reconstruction source(s) associated:
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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*** [[annotation-experimental_annotation]]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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== Reconstruction information  ==
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*** [[annotation-in-silico_annotation]]
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* Category: [[orthology]]
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*** [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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*** [[manual-primary_network]]
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* Category: [[annotation]]
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*** [[orthology-creinhardtii]]
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** Source: [[annotation-experimental_annotation]]
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* [[ADENYLOSUCCINATE-SYNTHASE-RXN]]
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*** Tool: [[pathwaytools]]
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** 2 associated gene(s):
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_6453]]
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*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_743]]
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** 6 reconstruction source(s) associated:
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−
*** [[annotation-experimental_annotation]]
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−
*** [[orthology-esiliculosus]]
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−
*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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−
*** [[orthology-creinhardtii]]
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* [[AMPSYN-RXN]]
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** 0 associated gene:
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−
** 3 reconstruction source(s) associated:
+
−
*** [[annotation-in-silico_annotation]]
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−
*** [[manual-primary_network]]
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−
*** [[annotation-experimental_annotation]]
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−
* [[ATPSYN-RXN]]
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** 18 associated gene(s):
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−
*** [[Tiso_gene_7215]]
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−
*** [[Tiso_gene_18105]]
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−
*** [[Tiso_gene_12618]]
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−
*** [[Tiso_gene_6012]]
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*** [[Tiso_gene_11754]]
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*** [[Tiso_gene_9460]]
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*** [[Tiso_gene_11192]]
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*** [[Tiso_gene_7213]]
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*** [[Tiso_gene_2798]]
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*** [[Tiso_gene_11155]]
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*** [[Tiso_gene_5307]]
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*** [[Tiso_gene_1366]]
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*** [[Tiso_gene_6592]]
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*** [[Tiso_gene_17383]]
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*** [[Tiso_gene_10981]]
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*** [[Tiso_gene_15850]]
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*** [[Tiso_gene_1365]]
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*** [[Tiso_gene_11753]]
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** 4 reconstruction source(s) associated:
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−
*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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−
*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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−
== Reaction(s) not found ==
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== External links  ==
 
== External links  ==
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* ECOCYC:
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* RHEA:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-7219 PWY-7219]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19649 19649]
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{{#set: taxonomic range=TAX-2759}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05577 R05577]
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{{#set: taxonomic range=TAX-2}}
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* UNIPROT:
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{{#set: common name=adenosine ribonucleotides de novo biosynthesis}}
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** [http://www.uniprot.org/uniprot/P56459 P56459]
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{{#set: reaction found=4}}
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** [http://www.uniprot.org/uniprot/O26328 O26328]
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{{#set: total reaction=4}}
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** [http://www.uniprot.org/uniprot/O83950 O83950]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/Q58950 Q58950]
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** [http://www.uniprot.org/uniprot/Q9ZLL9 Q9ZLL9]
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** [http://www.uniprot.org/uniprot/O32038 O32038]
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** [http://www.uniprot.org/uniprot/O67589 O67589]
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** [http://www.uniprot.org/uniprot/P43817 P43817]
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** [http://www.uniprot.org/uniprot/O51402 O51402]
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** [http://www.uniprot.org/uniprot/Q9CE80 Q9CE80]
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** [http://www.uniprot.org/uniprot/Q9ZE17 Q9ZE17]
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** [http://www.uniprot.org/uniprot/Q9X1F4 Q9X1F4]
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** [http://www.uniprot.org/uniprot/Q9JT23 Q9JT23]
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** [http://www.uniprot.org/uniprot/O58776 O58776]
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** [http://www.uniprot.org/uniprot/O84546 O84546]
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** [http://www.uniprot.org/uniprot/Q9Z7P2 Q9Z7P2]
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** [http://www.uniprot.org/uniprot/Q9PHM7 Q9PHM7]
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** [http://www.uniprot.org/uniprot/P47282 P47282]
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** [http://www.uniprot.org/uniprot/Q51422 Q51422]
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** [http://www.uniprot.org/uniprot/Q03577 Q03577]
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** [http://www.uniprot.org/uniprot/P36429 P36429]
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** [http://www.uniprot.org/uniprot/P75068 P75068]
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** [http://www.uniprot.org/uniprot/P73851 P73851]
 +
** [http://www.uniprot.org/uniprot/Q48979 Q48979]
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** [http://www.uniprot.org/uniprot/Q49028 Q49028]
 +
** [http://www.uniprot.org/uniprot/P04802 P04802]
 +
** [http://www.uniprot.org/uniprot/P15179 P15179]
 +
** [http://www.uniprot.org/uniprot/P21889 P21889]
 +
** [http://www.uniprot.org/uniprot/P14868 P14868]
 +
** [http://www.uniprot.org/uniprot/P15178 P15178]
 +
** [http://www.uniprot.org/uniprot/O81892 O81892]
 +
** [http://www.uniprot.org/uniprot/O74407 O74407]
 +
** [http://www.uniprot.org/uniprot/O07683 O07683]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=aspartyl-trna_synthetase}}
 +
{{#set: ec number=EC-6.1.1.12}}
 +
{{#set: gene associated=Tiso_gene_13081|Tiso_gene_17185|Tiso_gene_7126}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:37, 21 March 2018

Reaction ASPARTATE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • aspartyl-trna_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 tRNAasp[c] + 1 ATP[c] + 1 L-aspartate[c] => 1 diphosphate[c] + 1 an L-aspartyl-[tRNAasp][c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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