Difference between revisions of "RXN-3422"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=HOMOSER-THRESYN-PWY HOMOSER-THRESYN-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-3422 RXN-3422] == * direction: ** LEFT-TO-RIGHT * common name: ** caffeate_o-methyltransferase...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=HOMOSER-THRESYN-PWY HOMOSER-THRESYN-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-3422 RXN-3422] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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* common name:
 
* common name:
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** L-threonine biosynthesis
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** caffeate_o-methyltransferase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.1.1.68 EC-2.1.1.68]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''2''' reactions found over '''2''' reactions in the full pathway
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* With identifiers:
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* [[HOMOSERKIN-RXN]]
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** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[5-HYDROXY-FERULIC-ACID]][c] '''=>''' 1 [[SINAPATE]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_17705]]
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** 1 S-adenosyl-L-methionine[c] '''+''' 1 5-hydroxyferulate[c] '''=>''' 1 sinapate[c] '''+''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_17704]]
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** 7 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_18257]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-athaliana]]
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* Gene: [[Tiso_gene_18971]]
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*** [[orthology-synechocystis]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[orthology-creinhardtii]]
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== Pathways  ==
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* [[THRESYN-RXN]]
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* [[PWY-2181]], free phenylpropanoid acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2181 PWY-2181]
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** 4 associated gene(s):
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** '''3''' reactions found over '''4''' reactions in the full pathway
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*** [[Tiso_gene_12871]]
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== Reconstruction information  ==
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*** [[Tiso_gene_418]]
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* Category: [[orthology]]
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*** [[Tiso_gene_2614]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_419]]
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*** Tool: [[pantograph]]
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** 7 reconstruction source(s) associated:
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* Category: [[annotation]]
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*** [[annotation-experimental_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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*** Tool: [[pathwaytools]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
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== External links  ==
 
== External links  ==
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* ECOCYC:
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* LIGAND-RXN:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=HOMOSER-THRESYN-PWY HOMOSER-THRESYN-PWY]
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** [http://www.genome.jp/dbget-bin/www_bget?R02379 R02379]
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{{#set: taxonomic range=TAX-2157}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-4751}}
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{{#set: common name=caffeate_o-methyltransferase}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: ec number=EC-2.1.1.68}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: gene associated=Tiso_gene_18257|Tiso_gene_18971}}
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{{#set: common name=L-threonine biosynthesis}}
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{{#set: in pathway=PWY-2181}}
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{{#set: reaction found=2}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: total reaction=2}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: completion rate=100.0}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:38, 21 March 2018

Reaction RXN-3422

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • caffeate_o-methyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-2181, free phenylpropanoid acid biosynthesis: PWY-2181
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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