Difference between revisions of "DNA-containing-abasic-Sites"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSGLYPHOS-RXN PHOSGLYPHOS-RXN] == * direction: ** REVERSIBLE * common name: ** phosphoglycerate_c...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DNA-containing-abasic-Sites DNA-containing-abasic-Sites] == * common name: ** a DNA containing...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSGLYPHOS-RXN PHOSGLYPHOS-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DNA-containing-abasic-Sites DNA-containing-abasic-Sites] ==
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* direction:
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** REVERSIBLE
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* common name:
 
* common name:
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** phosphoglycerate_chloroplastic
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** a DNA containing an apurinic/apyrimidinic site
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** phosphoglycerate_kinase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.2.3 EC-2.7.2.3]
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* Synonym(s):
 
* Synonym(s):
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** an AP (apurinic or apyrimidinic) site
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** a DNA containing an abasic site
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** a DNA containing an AP site
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[4.2.99.18-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[G3P]][c] '''<=>''' 1 [[DPG]][c] '''+''' 1 [[ADP]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[3.2.2.21-RXN]]
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** 1 ATP[c] '''+''' 1 3-phospho-D-glycerate[c] '''<=>''' 1 1,3-bisphospho-D-glycerate[c] '''+''' 1 ADP[c]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_3527]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_18263]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_12104]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3526]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_14642]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_18264]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
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** '''9''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
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** '''8''' reactions found over '''10''' reactions in the full pathway
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* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
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** '''12''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
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** '''8''' reactions found over '''12''' reactions in the full pathway
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* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
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** '''11''' reactions found over '''15''' reactions in the full pathway
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* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
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** '''8''' reactions found over '''11''' reactions in the full pathway
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* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
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** '''14''' reactions found over '''18''' reactions in the full pathway
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* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
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** '''11''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
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** '''11''' reactions found over '''11''' reactions in the full pathway
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* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
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** '''10''' reactions found over '''12''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: common name=a DNA containing an apurinic/apyrimidinic site}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14801 14801]
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{{#set: common name=an AP (apurinic or apyrimidinic) site|a DNA containing an abasic site|a DNA containing an AP site}}
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* LIGAND-RXN:
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{{#set: consumed by=4.2.99.18-RXN}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01512 R01512]
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{{#set: produced by=3.2.2.21-RXN}}
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P11977 P11977]
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** [http://www.uniprot.org/uniprot/P09411 P09411]
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** [http://www.uniprot.org/uniprot/P09041 P09041]
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** [http://www.uniprot.org/uniprot/P07205 P07205]
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** [http://www.uniprot.org/uniprot/P16617 P16617]
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** [http://www.uniprot.org/uniprot/Q37743 Q37743]
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** [http://www.uniprot.org/uniprot/Q58058 Q58058]
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** [http://www.uniprot.org/uniprot/P56154 P56154]
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** [http://www.uniprot.org/uniprot/O29119 O29119]
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** [http://www.uniprot.org/uniprot/Q01655 Q01655]
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** [http://www.uniprot.org/uniprot/Q9URB3 Q9URB3]
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** [http://www.uniprot.org/uniprot/P47542 P47542]
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** [http://www.uniprot.org/uniprot/O27121 O27121]
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** [http://www.uniprot.org/uniprot/Q9PMQ5 Q9PMQ5]
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** [http://www.uniprot.org/uniprot/P40924 P40924]
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** [http://www.uniprot.org/uniprot/P43726 P43726]
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** [http://www.uniprot.org/uniprot/O66519 O66519]
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** [http://www.uniprot.org/uniprot/Q9JWS8 Q9JWS8]
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** [http://www.uniprot.org/uniprot/Q9CIW1 Q9CIW1]
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** [http://www.uniprot.org/uniprot/P36204 P36204]
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** [http://www.uniprot.org/uniprot/Q59181 Q59181]
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** [http://www.uniprot.org/uniprot/P50319 P50319]
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** [http://www.uniprot.org/uniprot/P50310 P50310]
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** [http://www.uniprot.org/uniprot/P51903 P51903]
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** [http://www.uniprot.org/uniprot/P18912 P18912]
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** [http://www.uniprot.org/uniprot/P41757 P41757]
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** [http://www.uniprot.org/uniprot/P27362 P27362]
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** [http://www.uniprot.org/uniprot/P24269 P24269]
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** [http://www.uniprot.org/uniprot/P00560 P00560]
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** [http://www.uniprot.org/uniprot/P25055 P25055]
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** [http://www.uniprot.org/uniprot/Q01604 Q01604]
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** [http://www.uniprot.org/uniprot/P00558 P00558]
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** [http://www.uniprot.org/uniprot/P07377 P07377]
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** [http://www.uniprot.org/uniprot/P07378 P07378]
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** [http://www.uniprot.org/uniprot/P14828 P14828]
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** [http://www.uniprot.org/uniprot/P09404 P09404]
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** [http://www.uniprot.org/uniprot/P29408 P29408]
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** [http://www.uniprot.org/uniprot/P20972 P20972]
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** [http://www.uniprot.org/uniprot/P20971 P20971]
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** [http://www.uniprot.org/uniprot/P24590 P24590]
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** [http://www.uniprot.org/uniprot/P29409 P29409]
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** [http://www.uniprot.org/uniprot/P33161 P33161]
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** [http://www.uniprot.org/uniprot/P29405 P29405]
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** [http://www.uniprot.org/uniprot/P50317 P50317]
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** [http://www.uniprot.org/uniprot/P50315 P50315]
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** [http://www.uniprot.org/uniprot/P29407 P29407]
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** [http://www.uniprot.org/uniprot/P61884 P61884]
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** [http://www.uniprot.org/uniprot/Q42542 Q42542]
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** [http://www.uniprot.org/uniprot/P50318 P50318]
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** [http://www.uniprot.org/uniprot/P46712 P46712]
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** [http://www.uniprot.org/uniprot/P78018 P78018]
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** [http://www.uniprot.org/uniprot/Q49073 Q49073]
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** [http://www.uniprot.org/uniprot/Q42961 Q42961]
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** [http://www.uniprot.org/uniprot/Q42962 Q42962]
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** [http://www.uniprot.org/uniprot/O81394 O81394]
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** [http://www.uniprot.org/uniprot/P41758 P41758]
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** [http://www.uniprot.org/uniprot/O32756 O32756]
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** [http://www.uniprot.org/uniprot/P38667 P38667]
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** [http://www.uniprot.org/uniprot/P08966 P08966]
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** [http://www.uniprot.org/uniprot/P08967 P08967]
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** [http://www.uniprot.org/uniprot/P0A799 P0A799]
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** [http://www.uniprot.org/uniprot/P09188 P09188]
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** [http://www.uniprot.org/uniprot/P14228 P14228]
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** [http://www.uniprot.org/uniprot/P08891 P08891]
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** [http://www.uniprot.org/uniprot/P08892 P08892]
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** [http://www.uniprot.org/uniprot/P08893 P08893]
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** [http://www.uniprot.org/uniprot/P12782 P12782]
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** [http://www.uniprot.org/uniprot/P12783 P12783]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=phosphoglycerate_chloroplastic}}
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{{#set: common name=phosphoglycerate_kinase}}
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{{#set: ec number=EC-2.7.2.3}}
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{{#set: gene associated=Tiso_gene_3527|Tiso_gene_18263|Tiso_gene_12104|Tiso_gene_3526|Tiso_gene_14642|Tiso_gene_18264}}
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{{#set: in pathway=PWY-1042|PWY-7003|SUCSYN-PWY|GLYCOLYSIS|PWY-6901|P124-PWY|PWY-6886|CALVIN-PWY|ANAGLYCOLYSIS-PWY|GLUCONEO-PWY|P122-PWY|P185-PWY|PWY-5484|PWY66-399}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:47, 21 March 2018

Metabolite DNA-containing-abasic-Sites

  • common name:
    • a DNA containing an apurinic/apyrimidinic site
  • Synonym(s):
    • an AP (apurinic or apyrimidinic) site
    • a DNA containing an abasic site
    • a DNA containing an AP site

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=DNA-containing-abasic-Sites&oldid=43732"