Difference between revisions of "DCMP-DEAMINASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** diami...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DCMP-DEAMINASE-RXN DCMP-DEAMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enz...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DCMP-DEAMINASE-RXN DCMP-DEAMINASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** diaminopimelate_decarboxylase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.1.20 EC-4.1.1.20]
+
** [http://enzyme.expasy.org/EC/3.5.4.12 EC-3.5.4.12]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[MESO-DIAMINOPIMELATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[LYS]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[DCMP]][c] '''=>''' 1 [[DUMP]][c] '''+''' 1 [[AMMONIUM]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 meso-diaminopimelate[c] '''=>''' 1 CO2[c] '''+''' 1 L-lysine[c]
+
** 1 H2O[c] '''+''' 1 H+[c] '''+''' 1 dCMP[c] '''=>''' 1 dUMP[c] '''+''' 1 ammonium[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10737]]
+
* Gene: [[Tiso_gene_2978]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[orthology-athaliana]]
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* [[Tiso_gene_12041]]
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** Source: [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
+
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
** '''8''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942]
+
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
−
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
−
* Category: [[annotation]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15101 15101]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22924 22924]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01663 R01663]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P19572 P19572]
+
** [http://www.uniprot.org/uniprot/P32321 P32321]
−
** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
+
** [http://www.uniprot.org/uniprot/P00814 P00814]
−
** [http://www.uniprot.org/uniprot/P44316 P44316]
+
** [http://www.uniprot.org/uniprot/P16006 P16006]
−
** [http://www.uniprot.org/uniprot/P56129 P56129]
+
** [http://www.uniprot.org/uniprot/P06773 P06773]
−
** [http://www.uniprot.org/uniprot/O67262 O67262]
+
** [http://www.uniprot.org/uniprot/O74069 O74069]
−
** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
+
−
** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
+
−
** [http://www.uniprot.org/uniprot/P00861 P00861]
+
−
** [http://www.uniprot.org/uniprot/O27390 O27390]
+
−
** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
+
−
** [http://www.uniprot.org/uniprot/Q58497 Q58497]
+
−
** [http://www.uniprot.org/uniprot/O29458 O29458]
+
−
** [http://www.uniprot.org/uniprot/P41023 P41023]
+
−
** [http://www.uniprot.org/uniprot/P23630 P23630]
+
−
** [http://www.uniprot.org/uniprot/P09890 P09890]
+
−
** [http://www.uniprot.org/uniprot/Q55484 Q55484]
+
−
** [http://www.uniprot.org/uniprot/O05321 O05321]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=diaminopimelate_decarboxylase}}
+
{{#set: ec number=EC-3.5.4.12}}
−
{{#set: ec number=EC-4.1.1.20}}
+
{{#set: gene associated=Tiso_gene_2978}}
−
{{#set: gene associated=Tiso_gene_10737|Tiso_gene_12041}}
+
{{#set: in pathway=PWY-7210}}
−
{{#set: in pathway=PWY-5097|PWY-2942|DAPLYSINESYN-PWY|PWY-2941}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
−
{{#set: reconstruction source=orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:55, 21 March 2018

Reaction DCMP-DEAMINASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 H+[c] + 1 dCMP[c] => 1 dUMP[c] + 1 ammonium[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP: PWY-7210
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links




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