Difference between revisions of "NAPHTHOATE-SYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15131 RXN-15131] == * direction: ** LEFT-TO-RIGHT * common name: ** cystathionine beta-lyase *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NAPHTHOATE-SYN-RXN NAPHTHOATE-SYN-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enz...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15131 RXN-15131] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NAPHTHOATE-SYN-RXN NAPHTHOATE-SYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
+
* ec number:
−
** cystathionine beta-lyase
+
** [http://enzyme.expasy.org/EC/4.1.3.36 EC-4.1.3.36]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[L-CYSTATHIONINE]][c] '''=>''' 1 [[HOMO-CYS]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[2-AMINOACRYLATE]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[CPD-6972]][c] '''=>''' 1 [[CPD-9925]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-cystathionine[c] '''=>''' 1 L-homocysteine[c] '''+''' 1 H+[c] '''+''' 1 2-aminoprop-2-enoate[c]
+
** 1 H+[c] '''+''' 1 4-(2'-carboxyphenyl)-4-oxobutyryl-CoA[c] '''=>''' 1 1,4-dihydroxy-2-naphthoyl-CoA[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_3732]]
+
* Gene: [[Tiso_gene_14257]]
−
** EXPERIMENTAL_ANNOTATION
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** Source: [[orthology-athaliana]]
−
***AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_19690]]
 +
** Source: [[orthology-synechocystis]]
 +
* Gene: [[Tiso_gene_16145]]
 +
** Source: [[orthology-synechocystis]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSER-METSYN-PWY HOMOSER-METSYN-PWY]
+
* [[PWY-5837]], 1,4-dihydroxy-2-naphthoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5837 PWY-5837]
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-801]], L-homocysteine and L-cysteine interconversion: [http://metacyc.org/META/NEW-IMAGE?object=PWY-801 PWY-801]
+
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-702]], L-methionine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-702 PWY-702]
+
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[annotation]]
+
* Category: [[orthology]]
−
** Source: [[annotation-experimental_annotation]]
+
** Source: [[orthology-athaliana]]
−
*** Tool: [[pathwaytools]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26562 26562]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R07263 R07263]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9CHK2 Q9CHK2]
 +
** [http://www.uniprot.org/uniprot/P44960 P44960]
 +
** [http://www.uniprot.org/uniprot/P0ABU0 P0ABU0]
 +
** [http://www.uniprot.org/uniprot/P23966 P23966]
 +
** [http://www.uniprot.org/uniprot/Q59464 Q59464]
 +
** [http://www.uniprot.org/uniprot/P73495 P73495]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=cystathionine beta-lyase}}
+
{{#set: ec number=EC-4.1.3.36}}
−
{{#set: gene associated=Tiso_gene_3732}}
+
{{#set: gene associated=Tiso_gene_14257|Tiso_gene_19690|Tiso_gene_16145}}
−
{{#set: in pathway=HOMOSER-METSYN-PWY|PWY-801|PWY-702}}
+
{{#set: in pathway=PWY-5837}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=annotation-experimental_annotation}}
+
{{#set: reconstruction source=orthology-athaliana|orthology-synechocystis}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}

Latest revision as of 20:00, 21 March 2018

Reaction NAPHTHOATE-SYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 4-(2'-carboxyphenyl)-4-oxobutyryl-CoA[c] => 1 1,4-dihydroxy-2-naphthoyl-CoA[c] + 1 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5837, 1,4-dihydroxy-2-naphthoate biosynthesis: PWY-5837
    • 4 reactions found over 7 reactions in the full pathway

Reconstruction information

External links




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