Difference between revisions of "RXN-16910"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE--COA-LIGASE-GDP-FORMING-RXN SUCCINATE--COA-LIGASE-GDP-FORMING-RXN] == * direction: ** REV...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16910 RXN-16910] == * direction: ** LEFT-TO-RIGHT * common name: ** carbamoyl_phosphate_synthet...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE--COA-LIGASE-GDP-FORMING-RXN SUCCINATE--COA-LIGASE-GDP-FORMING-RXN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16910 RXN-16910] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
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** LEFT-TO-RIGHT
−
* ec number:
+
* common name:
−
** [http://enzyme.expasy.org/EC/6.2.1.4 EC-6.2.1.4]
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** carbamoyl_phosphate_synthetase
 +
** protein_pyr1-3
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GTP]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[CO-A]][c] '''<=>''' 1 [[GDP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[SUC-COA]][c]
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** 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-18238]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[CARBAMATE]][c] '''+''' 2 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 GTP[c] '''+''' 1 succinate[c] '''+''' 1 coenzyme A[c] '''<=>''' 1 GDP[c] '''+''' 1 phosphate[c] '''+''' 1 succinyl-CoA[c]
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** 1 ammonium[c] '''+''' 1 carboxyphosphate[c] '''=>''' 1 phosphate[c] '''+''' 1 carbamate[c] '''+''' 2 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_11866]]
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* Gene: [[Tiso_gene_4976]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4975]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4685]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
+
* [[PWY-7693]], guadinomine B biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7693 PWY-7693]
−
** '''10''' reactions found over '''11''' reactions in the full pathway
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** '''3''' reactions found over '''12''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
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* Category: [[annotation]]
−
** Source: [[orthology-esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
−
*** Tool: [[pantograph]]
+
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22120 22120]
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{{#set: common name=carbamoyl_phosphate_synthetase}}
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* LIGAND-RXN:
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{{#set: common name=protein_pyr1-3}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00432 R00432]
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{{#set: gene associated=Tiso_gene_4976|Tiso_gene_4975|Tiso_gene_4685}}
−
* UNIPROT:
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{{#set: in pathway=PWY-7693}}
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** [http://www.uniprot.org/uniprot/Q03184 Q03184]
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{{#set: reconstruction category=annotation}}
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** [http://www.uniprot.org/uniprot/O08371 O08371]
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
−
** [http://www.uniprot.org/uniprot/O84829 O84829]
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{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q8LAD2 Q8LAD2]
+
−
** [http://www.uniprot.org/uniprot/P53587 P53587]
+
−
** [http://www.uniprot.org/uniprot/P53312 P53312]
+
−
** [http://www.uniprot.org/uniprot/P36967 P36967]
+
−
** [http://www.uniprot.org/uniprot/P13086 P13086]
+
−
** [http://www.uniprot.org/uniprot/Q9Y436 Q9Y436]
+
−
** [http://www.uniprot.org/uniprot/P68209 P68209]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: ec number=EC-6.2.1.4}}
+
−
{{#set: gene associated=Tiso_gene_11866}}
+
−
{{#set: in pathway=PWY66-398}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction source=orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 20:07, 21 March 2018

Reaction RXN-16910

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • carbamoyl_phosphate_synthetase
    • protein_pyr1-3
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ammonium[c] + 1 carboxyphosphate[c] => 1 phosphate[c] + 1 carbamate[c] + 2 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7693, guadinomine B biosynthesis: PWY-7693
    • 3 reactions found over 12 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-16910&oldid=46097"