Difference between revisions of "RXN-13414"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13414 RXN-13414] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNARA-8002 RXNARA-8002] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13414 RXN-13414] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* Synonym(s):
 
* Synonym(s):
** prephytoene-diphosphate synthase
 
** PSase
 
** geranylgeranyl-diphosphate geranylgeranyltransferase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1 [[CPD-464]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-12321]][c]
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** 1 [[SPERMIDINE]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-14378]][c]
 
* With common name(s):
 
* With common name(s):
** 1 prephytoene diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 15-cis-phytoene[c]
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** 1 spermidine[c] '''+''' 1 NAD+[c] '''=>''' 1 NADH[c] '''+''' 1 H+[c] '''+''' 1 dehydrospermidine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
Genes have been associated with this reaction based on different elements listed below.
 
* [[Tiso_gene_15914]]
 
** [[pantograph]]-[[esiliculosus]]
 
 
== Pathways  ==
 
== Pathways  ==
* [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287]
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* [[PWY-5905]], hypusine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5905 PWY-5905]
** '''4''' reactions found over '''5''' reactions in the full pathway
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** '''5''' reactions found over '''5''' reactions in the full pathway
* [[PWY-5942]], trans-lycopene biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5942 PWY-5942]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
 
== Reconstruction information  ==
* Category: [[orthology]]
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* Category: [[annotation]]
** Source: [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
*** Tool: [[pantograph]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
* LIGAND-RXN:
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* RHEA:
** [http://www.genome.jp/dbget-bin/www_bget?R07270 R07270]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19908 19908]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=prephytoene-diphosphate synthase|PSase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
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{{#set: in pathway=PWY-5905}}
{{#set: gene associated=Tiso_gene_15914}}
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{{#set: reconstruction category=annotation}}
{{#set: in pathway=PWY-6287|PWY-5942|PWY-6475}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pathwaytools}}
{{#set: reconstruction source=orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 20:04, 21 March 2018

Reaction RXN-13414

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 spermidine[c] + 1 NAD+[c] => 1 NADH[c] + 1 H+[c] + 1 dehydrospermidine[c]

Genes associated with this reaction

Pathways

  • PWY-5905, hypusine biosynthesis: PWY-5905
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links