Difference between revisions of "THI-P-SYN-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_828 == * left end position: ** 21934 * transcription direction: ** POSITIVE * right end position: ** 27885 * centisome position: ** 76.7916...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THI-P-SYN-RXN THI-P-SYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** thiamine_mon...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_828 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THI-P-SYN-RXN THI-P-SYN-RXN] ==
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* left end position:
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* direction:
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** 21934
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** ORF
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* right end position:
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** thiamine_monophosphate_synthase
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** 27885
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.5.1.3 EC-2.5.1.3]
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** 76.79166   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[5.99.1.3-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THZ-P]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[THIAMINE-P]][c]
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***ec-number
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* With common name(s):
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** [[pantograph]]-[[esiliculosus]]
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** 1 4-amino-2-methyl-5-(diphosphomethyl)pyrimidine[c] '''+''' 1 H+[c] '''+''' 1 4-methyl-5-(2-phosphooxyethyl)thiazole[c] '''=>''' 1 diphosphate[c] '''+''' 1 thiamine phosphate[c]
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== Pathways associated ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_10320]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_2159]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_2160]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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== Pathways ==
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* [[PWY-6897]], thiamine salvage II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6897 PWY-6897]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6908]], thiamine diphosphate biosynthesis IV (eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6908 PWY-6908]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7356]], thiamine salvage IV (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7356 PWY-7356]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7357 PWY-7357]
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** '''3''' reactions found over '''6''' reactions in the full pathway
 +
== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=21934}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22328 22328]
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{{#set: right end position=27885}}
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* LIGAND-RXN:
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{{#set: centisome position=76.79166    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R03223 R03223]
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{{#set: reaction associated=5.99.1.3-RXN}}
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P41835 P41835]
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** [http://www.uniprot.org/uniprot/P71350 P71350]
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** [http://www.uniprot.org/uniprot/O25514 O25514]
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** [http://www.uniprot.org/uniprot/Q9PNL3 Q9PNL3]
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** [http://www.uniprot.org/uniprot/Q9JWI2 Q9JWI2]
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** [http://www.uniprot.org/uniprot/Q9ZL01 Q9ZL01]
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** [http://www.uniprot.org/uniprot/P30137 P30137]
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** [http://www.uniprot.org/uniprot/P39594 P39594]
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** [http://www.uniprot.org/uniprot/P40386 P40386]
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** [http://www.uniprot.org/uniprot/P72965 P72965]
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** [http://www.uniprot.org/uniprot/O48881 O48881]
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** [http://www.uniprot.org/uniprot/O34294 O34294]
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** [http://www.uniprot.org/uniprot/Q9ZBL5 Q9ZBL5]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: common name=thiamine_monophosphate_synthase}}
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{{#set: ec number=EC-2.5.1.3}}
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{{#set: gene associated=Tiso_gene_10320|Tiso_gene_2159|Tiso_gene_2160}}
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{{#set: in pathway=PWY-6897|PWY-6908|PWY-7356|PWY-7357}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:37, 21 March 2018

Reaction THI-P-SYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • thiamine_monophosphate_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6897, thiamine salvage II: PWY-6897
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6908, thiamine diphosphate biosynthesis IV (eukaryotes): PWY-6908
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7356, thiamine salvage IV (yeast): PWY-7356
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7357, thiamine formation from pyrithiamine and oxythiamine (yeast): PWY-7357
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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