Difference between revisions of "Tiso gene 6004"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TREHALA-RXN TREHALA-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** glycoside_hydrol...")
(Created page with "Category:Gene == Gene Tiso_gene_6004 == * right end position: ** 12670 * transcription direction: ** POSITIVE * left end position: ** 11397 * centisome position: ** 60.966...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TREHALA-RXN TREHALA-RXN] ==
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== Gene Tiso_gene_6004 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 12670
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* common name:
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* transcription direction:
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** ORF
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** POSITIVE
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** glycoside_hydrolase_family_37
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* left end position:
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* ec number:
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** 11397
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** [http://enzyme.expasy.org/EC/3.2.1.28 EC-3.2.1.28]
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* centisome position:
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** 60.966087   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[METHYLENETHFDEHYDROG-NADP-RXN]]
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** 1 [[TREHALOSE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GLC]][c] '''+''' 1 [[ALPHA-GLUCOSE]][c]
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* With common name(s):
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** 1 α,α-trehalose[c] '''+''' 1 H2O[c] '''=>''' 1 β-D-glucopyranose[c] '''+''' 1 α-D-glucopyranose[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_7688]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_13748]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY0-1182]], trehalose degradation II (trehalase): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1182 PWY0-1182]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY0-1466]], trehalose degradation VI (periplasmic): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1466 PWY0-1466]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-1722]]
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* [[PWY-3841]]
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* [[1CMET2-PWY]]
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* [[CODH-PWY]]
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* [[PWY-5497]]
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* [[PWY-2201]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=12670}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00010 R00010]
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{{#set: transcription direction=POSITIVE}}
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* UNIPROT:
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{{#set: left end position=11397}}
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** [http://www.uniprot.org/uniprot/P19813 P19813]
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{{#set: centisome position=60.966087    }}
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** [http://www.uniprot.org/uniprot/O43280 O43280]
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{{#set: reaction associated=METHYLENETHFDEHYDROG-NADP-RXN}}
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** [http://www.uniprot.org/uniprot/P13482 P13482]
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{{#set: pathway associated=PWY-1722|PWY-3841|1CMET2-PWY|CODH-PWY|PWY-5497|PWY-2201}}
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** [http://www.uniprot.org/uniprot/P32359 P32359]
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** [http://www.uniprot.org/uniprot/P32358 P32358]
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** [http://www.uniprot.org/uniprot/P35172 P35172]
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** [http://www.uniprot.org/uniprot/P62601 P62601]
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** [http://www.uniprot.org/uniprot/P32356 P32356]
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** [http://www.uniprot.org/uniprot/P48016 P48016]
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** [http://www.uniprot.org/uniprot/P78922 P78922]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: common name=glycoside_hydrolase_family_37}}
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{{#set: ec number=EC-3.2.1.28}}
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{{#set: gene associated=Tiso_gene_7688|Tiso_gene_13748}}
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{{#set: in pathway=PWY0-1182|PWY0-1466}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:15, 21 March 2018

Gene Tiso_gene_6004

  • right end position:
    • 12670
  • transcription direction:
    • POSITIVE
  • left end position:
    • 11397
  • centisome position:
    • 60.966087
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_6004&oldid=47173"