Difference between revisions of "DGDPKIN-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-11673 CPD-11673] == * smiles: ** C(O)CC1(=CNC3(=C1C=C(OC2(OC(C(=O)O)C(O)C(O)C(O)2))C=C3)) *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DGDPKIN-RXN DGDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** adenylate_kinase...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-11673 CPD-11673] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DGDPKIN-RXN DGDPKIN-RXN] ==
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* smiles:
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* direction:
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** C(O)CC1(=CNC3(=C1C=C(OC2(OC(C(=O)O)C(O)C(O)C(O)2))C=C3))
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** 5-hydroxytryptophol glucuronide
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** ORF
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* inchi key:
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** adenylate_kinase_domain-containing_protein_1
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** InChIKey=NFLHLWRXDOXSCF-UHFFFAOYSA-N
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** nucleoside_diphosphate_kinase
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* molecular weight:
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* ec number:
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** 353.328   
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** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[RXN-10784]]
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** 1 [[ATP]][c] '''+''' 1 [[DGDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DGTP]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 ATP[c] '''+''' 1 dGDP[c] '''=>''' 1 ADP[c] '''+''' 1 dGTP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_9290]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_18224]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_195]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_17272]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_16529]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_17271]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-7222]], guanosine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7222 PWY-7222]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7224]], purine deoxyribonucleosides salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7224 PWY-7224]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7226]], guanosine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7226 PWY-7226]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=46173086 46173086]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27690 27690]
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{{#set: smiles=C(O)CC1(=CNC3(=C1C=C(OC2(OC(C(=O)O)C(O)C(O)C(O)2))C=C3))}}
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* LIGAND-RXN:
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{{#set: common name=5-hydroxytryptophol glucuronide}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01857 R01857]
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{{#set: inchi key=InChIKey=NFLHLWRXDOXSCF-UHFFFAOYSA-N}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: molecular weight=353.328    }}
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{{#set: common name=ORF}}
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{{#set: produced by=RXN-10784}}
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{{#set: common name=adenylate_kinase_domain-containing_protein_1}}
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{{#set: common name=nucleoside_diphosphate_kinase}}
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{{#set: ec number=EC-2.7.4.6}}
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{{#set: gene associated=Tiso_gene_9290|Tiso_gene_18224|Tiso_gene_195|Tiso_gene_17272|Tiso_gene_16529|Tiso_gene_17271}}
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{{#set: in pathway=PWY-7222|PWY-7224|PWY-7226}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:18, 21 March 2018

Reaction DGDPKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • adenylate_kinase_domain-containing_protein_1
    • nucleoside_diphosphate_kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 dGDP[c] => 1 ADP[c] + 1 dGTP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7222, guanosine deoxyribonucleotides de novo biosynthesis II: PWY-7222
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7224, purine deoxyribonucleosides salvage: PWY-7224
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-7226, guanosine deoxyribonucleotides de novo biosynthesis I: PWY-7226
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links






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