Difference between revisions of "P163-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8443 RXN-8443] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P163-PWY P163-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8443 RXN-8443] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P163-PWY P163-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/2.7.1.173 EC-2.7.1.173]
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** L-lysine fermentation to acetate and butanoate
 
* Synonym(s):
 
* Synonym(s):
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** 3-keto-5-aminohexanoate pathway
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** L-lysine fermentation to acetate and butyrate
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''10''' reactions in the full pathway
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** 1 [[CPD-8259]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[NICOTINATE_NUCLEOTIDE]][c] '''+''' 1 [[PROTON]][c]
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* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 β-D-ribosylnicotinate[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 β-nicotinate D-ribonucleotide[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_16181]]
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*** [[Tiso_gene_15327]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_17451]]
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Genes have been associated with this reaction based on different elements listed below.
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** 4 reconstruction source(s) associated:
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* [[Tiso_gene_12183]]
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*** [[orthology-athaliana]]
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** [[pantograph]]-[[athaliana]]
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*** [[orthology-creinhardtii]]
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* [[Tiso_gene_18221]]
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*** [[orthology-synechocystis]]
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** [[pantograph]]-[[athaliana]]
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*** [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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== Reaction(s) not found ==
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* [[Tiso_gene_12316]]
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* [http://metacyc.org/META/NEW-IMAGE?object=1.4.1.11-RXN 1.4.1.11-RXN]
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** [[pantograph]]-[[athaliana]]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.8.3.9-RXN 2.8.3.9-RXN]
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* [[Tiso_gene_12252]]
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* [http://metacyc.org/META/NEW-IMAGE?object=4.3.1.14-RXN 4.3.1.14-RXN]
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** [[pantograph]]-[[athaliana]]
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* [http://metacyc.org/META/NEW-IMAGE?object=ACETATEKIN-RXN ACETATEKIN-RXN]
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** [[pantograph]]-[[esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=BETA-LYSINE-56-AMINOMUTASE-RXN BETA-LYSINE-56-AMINOMUTASE-RXN]
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* [[Tiso_gene_12827]]
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* [http://metacyc.org/META/NEW-IMAGE?object=BUTYRYL-COA-DEHYDROGENASE-RXN BUTYRYL-COA-DEHYDROGENASE-RXN]
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** [[pantograph]]-[[athaliana]]
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* [http://metacyc.org/META/NEW-IMAGE?object=LYSINE-23-AMINOMUTASE-RXN LYSINE-23-AMINOMUTASE-RXN]
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* [[Tiso_gene_18943]]
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* [http://metacyc.org/META/NEW-IMAGE?object=PHOSACETYLTRANS-RXN PHOSACETYLTRANS-RXN]
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** [[pantograph]]-[[athaliana]]
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* [http://metacyc.org/META/NEW-IMAGE?object=R125-RXN R125-RXN]
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* [[Tiso_gene_4902]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_8561]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_15010]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_14030]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_17047]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_8616]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_6111]]
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** [[pantograph]]-[[athaliana]]
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−
* [[Tiso_gene_19579]]
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** [[pantograph]]-[[athaliana]]
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−
* [[Tiso_gene_13724]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_4145]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_4144]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_15483]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_17530]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_2752]]
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** [[pantograph]]-[[athaliana]]
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−
* [[Tiso_gene_9582]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_14059]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_19151]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_12450]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_1894]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_16455]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_13509]]
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** [[pantograph]]-[[athaliana]]
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−
* [[Tiso_gene_2262]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_12828]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_19763]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_17980]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_19611]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_8480]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_1696]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_17305]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_17795]]
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** [[pantograph]]-[[athaliana]]
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−
== Pathways  ==
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* [[PWY-5381]], pyridine nucleotide cycling (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5381 PWY-5381]
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** '''3''' reactions found over '''11''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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*** [[athaliana]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25568 25568]
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{{#set: common name=L-lysine fermentation to acetate and butanoate}}
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* LIGAND-RXN:
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{{#set: common name=3-keto-5-aminohexanoate pathway|L-lysine fermentation to acetate and butyrate}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03347 R03347]
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{{#set: reaction found=1}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: total reaction=10}}
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{{#set: ec number=EC-2.7.1.173}}
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{{#set: completion rate=10.0}}
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{{#set: gene associated=Tiso_gene_12183|Tiso_gene_18221|Tiso_gene_12316|Tiso_gene_12252|Tiso_gene_12827|Tiso_gene_18943|Tiso_gene_4902|Tiso_gene_8561|Tiso_gene_15010|Tiso_gene_14030|Tiso_gene_17047|Tiso_gene_8616|Tiso_gene_6111|Tiso_gene_19579|Tiso_gene_13724|Tiso_gene_4145|Tiso_gene_4144|Tiso_gene_15483|Tiso_gene_17530|Tiso_gene_2752|Tiso_gene_9582|Tiso_gene_14059|Tiso_gene_19151|Tiso_gene_12450|Tiso_gene_1894|Tiso_gene_16455|Tiso_gene_13509|Tiso_gene_2262|Tiso_gene_12828|Tiso_gene_19763|Tiso_gene_17980|Tiso_gene_19611|Tiso_gene_8480|Tiso_gene_1696|Tiso_gene_17305|Tiso_gene_17795}}
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−
{{#set: in pathway=PWY-5381}}
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{{#set: reconstruction category=orthology}}
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−
{{#set: reconstruction tool=pantograph}}
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−
{{#set: reconstruction source=esiliculosus|athaliana}}
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Latest revision as of 19:40, 21 March 2018

Pathway P163-PWY

  • taxonomic range:
  • common name:
    • L-lysine fermentation to acetate and butanoate
  • Synonym(s):
    • 3-keto-5-aminohexanoate pathway
    • L-lysine fermentation to acetate and butyrate

Reaction(s) found

1 reactions found over 10 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=P163-PWY&oldid=43148"