Difference between revisions of "1.14.11.2-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ISOCHORISMATE ISOCHORISMATE] == * smiles: ** C=C(C(=O)[O-])OC1(C=CC=C(C1O)C([O-])=O) * inchi ke...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.14.11.2-RXN 1.14.11.2-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** prolyl_4-hydroxylas...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ISOCHORISMATE ISOCHORISMATE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.14.11.2-RXN 1.14.11.2-RXN] ==
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* smiles:
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* direction:
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** C=C(C(=O)[O-])OC1(C=CC=C(C1O)C([O-])=O)
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** LEFT-TO-RIGHT
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* inchi key:
+
−
** InChIKey=NTGWPRCCOQCMGE-YUMQZZPRSA-L
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* common name:
 
* common name:
−
** isochorismate
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** prolyl_4-hydroxylase
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* molecular weight:
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** ORF
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** 224.17   
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* ec number:
 +
** [http://enzyme.expasy.org/EC/1.14.11.2 EC-1.14.11.2]
 
* Synonym(s):
 
* Synonym(s):
−
** Isochorismic acid
 
  
−
== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[2.5.1.64-RXN]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[PROCOLLAGEN-L-PROLINE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''=>''' 1 [[SUC]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-6321]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
−
* [[ISOCHORSYN-RXN]]
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** 1 a [procollagen]-L-proline[c] '''+''' 1 oxygen[c] '''+''' 1 2-oxoglutarate[c] '''=>''' 1 succinate[c] '''+''' 1 CO2[c] '''+''' 1 a [procollagen] trans 4-hyroxy-L-proline[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_4246]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_18689]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18933]]
 +
** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_9035]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_3021]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_13008]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_9636]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9165]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_6296]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_2158]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_16122]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9455]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_16842]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17823]]
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** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18208]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_292]]
 +
** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_18145]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_9873]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_15328]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1468]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_2280]]
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** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_19638]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17593]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18235]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_15594]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_8652]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17919]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9227]]
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways  ==
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* CAS : 22642-82-6
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* LIGAND-RXN:
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* DRUGBANK : DB02793
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** [http://www.genome.jp/dbget-bin/www_bget?R03219 R03219]
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* PUBCHEM:
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* UNIPROT:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5460580 5460580]
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** [http://www.uniprot.org/uniprot/P21195 P21195]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/Q10576 Q10576]
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** [http://www.genome.jp/dbget-bin/www_bget?C00885 C00885]
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** [http://www.uniprot.org/uniprot/P16924 P16924]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/P13674 P13674]
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** [http://www.chemspider.com/Chemical-Structure.4574080.html 4574080]
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** [http://www.uniprot.org/uniprot/P05307 P05307]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P09102 P09102]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=29780 29780]
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** [http://www.uniprot.org/uniprot/P07237 P07237]
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* BIGG : ichor
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** [http://www.uniprot.org/uniprot/Q922C8 Q922C8]
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{{#set: smiles=C=C(C(=O)[O-])OC1(C=CC=C(C1O)C([O-])=O)}}
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** [http://www.uniprot.org/uniprot/P04785 P04785]
−
{{#set: inchi key=InChIKey=NTGWPRCCOQCMGE-YUMQZZPRSA-L}}
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** [http://www.uniprot.org/uniprot/P54001 P54001]
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{{#set: common name=isochorismate}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: molecular weight=224.17    }}
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{{#set: common name=prolyl_4-hydroxylase}}
−
{{#set: common name=Isochorismic acid}}
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{{#set: common name=ORF}}
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{{#set: consumed by=2.5.1.64-RXN}}
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{{#set: ec number=EC-1.14.11.2}}
−
{{#set: consumed or produced by=ISOCHORSYN-RXN}}
+
{{#set: gene associated=Tiso_gene_4246|Tiso_gene_18689|Tiso_gene_18933|Tiso_gene_9035|Tiso_gene_3021|Tiso_gene_13008|Tiso_gene_9636|Tiso_gene_9165|Tiso_gene_6296|Tiso_gene_2158|Tiso_gene_16122|Tiso_gene_9455|Tiso_gene_16842|Tiso_gene_17823|Tiso_gene_18208|Tiso_gene_292|Tiso_gene_18145|Tiso_gene_9873|Tiso_gene_15328|Tiso_gene_1468|Tiso_gene_2280|Tiso_gene_19638|Tiso_gene_17593|Tiso_gene_18235|Tiso_gene_15594|Tiso_gene_8652|Tiso_gene_17919|Tiso_gene_9227}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:41, 21 March 2018

Reaction 1.14.11.2-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • prolyl_4-hydroxylase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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