Difference between revisions of "PWY-3221"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SAICARSYN-RXN SAICARSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoribosylamino...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-3221 PWY-3221] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-33...")
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SAICARSYN-RXN SAICARSYN-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-3221 PWY-3221] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-3398]
 
* common name:
 
* common name:
−
** phosphoribosylaminoimidazole-succinocarboxamide_synthase
+
** dTDP-L-rhamnose biosynthesis II
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/6.3.2.6 EC-6.3.2.6]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''2''' reactions found over '''3''' reactions in the full pathway
−
** 1 [[PHOSPHORIBOSYL-CARBOXY-AMINOIMIDAZOLE]][c] '''+''' 1 [[L-ASPARTATE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
+
* [[DTDPGLUCDEHYDRAT-RXN]]
−
* With common name(s):
+
** 2 associated gene(s):
−
** 1 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate[c] '''+''' 1 L-aspartate[c] '''+''' 1 ATP[c] '''=>''' 1 phosphate[c] '''+''' 1 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole[c] '''+''' 1 ADP[c] '''+''' 1 H+[c]
+
*** [[Tiso_gene_7329]]
−
 
+
*** [[Tiso_gene_12394]]
−
== Genes associated with this reaction  ==
+
** 4 reconstruction source(s) associated:
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[orthology-athaliana]]
−
* [[Tiso_gene_20436]]
+
*** [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** [[orthology-synechocystis]]
−
***AUTOMATED-NAME-MATCH
+
*** [[orthology-esiliculosus]]
−
** [[pantograph]]-[[creinhardtii]]
+
* [[DTDPGLUCOSEPP-RXN]]
−
== Pathways  ==
+
** 1 associated gene(s):
−
* [[PWY-6123]], inosine-5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6123 PWY-6123]
+
*** [[Tiso_gene_14704]]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** 1 reconstruction source(s) associated:
−
* [[PWY-6124]], inosine-5'-phosphate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6124 PWY-6124]
+
*** [[orthology-synechocystis]]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
== Reaction(s) not found ==
−
* [[PWY-7234]], inosine-5'-phosphate biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7234 PWY-7234]
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-5461 RXN-5461]
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[creinhardtii]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* ARACYC:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22628 22628]
+
** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-3221 PWY-3221]
−
* LIGAND-RXN:
+
{{#set: taxonomic range=TAX-3398}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04591 R04591]
+
{{#set: common name=dTDP-L-rhamnose biosynthesis II}}
−
* UNIPROT:
+
{{#set: reaction found=2}}
−
** [http://www.uniprot.org/uniprot/Q07296 Q07296]
+
{{#set: total reaction=3}}
−
** [http://www.uniprot.org/uniprot/Q9PHZ9 Q9PHZ9]
+
{{#set: completion rate=67.0}}
−
** [http://www.uniprot.org/uniprot/P0A7D7 P0A7D7]
+
−
** [http://www.uniprot.org/uniprot/P12046 P12046]
+
−
** [http://www.uniprot.org/uniprot/Q58987 Q58987]
+
−
** [http://www.uniprot.org/uniprot/Q9JV73 Q9JV73]
+
−
** [http://www.uniprot.org/uniprot/P50124 P50124]
+
−
** [http://www.uniprot.org/uniprot/P27602 P27602]
+
−
** [http://www.uniprot.org/uniprot/P27616 P27616]
+
−
** [http://www.uniprot.org/uniprot/P22234 P22234]
+
−
** [http://www.uniprot.org/uniprot/P73471 P73471]
+
−
** [http://www.uniprot.org/uniprot/Q9R7D5 Q9R7D5]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=phosphoribosylaminoimidazole-succinocarboxamide_synthase}}
+
−
{{#set: ec number=EC-6.3.2.6}}
+
−
{{#set: gene associated=Tiso_gene_20436}}
+
−
{{#set: in pathway=PWY-6123|PWY-6124|PWY-7234}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 19:46, 21 March 2018

Pathway PWY-3221

  • taxonomic range:
  • common name:
    • dTDP-L-rhamnose biosynthesis II
  • Synonym(s):

Reaction(s) found

2 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links



Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-3221&oldid=43682"