Difference between revisions of "RXN0-1133"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXS-RXN DXS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 1-deoxy-d-xylulose_5-phosphate_...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1133 RXN0-1133] == * direction: ** LEFT-TO-RIGHT * common name: ** dihydrolipoamide_acetyltran...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXS-RXN DXS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1133 RXN0-1133] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 1-deoxy-d-xylulose_5-phosphate_chloroplast
+
** dihydrolipoamide_acetyltransferase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.2.1.7 EC-2.2.1.7]
+
** [http://enzyme.expasy.org/EC/2.3.1.12 EC-2.3.1.12]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PYRUVATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[GAP]][c] '''=>''' 1 [[DEOXYXYLULOSE-5P]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[ACETYL-COA]][c] '''+''' 1 [[Pyruvate-dehydrogenase-dihydrolipoate]][c] '''=>''' 1 [[Pyruvate-dehydrogenase-acetylDHlipoyl]][c] '''+''' 1 [[CO-A]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 pyruvate[c] '''+''' 1 H+[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c] '''=>''' 1 1-deoxy-D-xylulose 5-phosphate[c] '''+''' 1 CO2[c]
+
** 1 acetyl-CoA[c] '''+''' 1 a [pyruvate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine[c] '''=>''' 1 a [pyruvate dehydrogenase E2 protein] N6-S-acetyldihydrolipoyl-L-lysine[c] '''+''' 1 coenzyme A[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_17311]]
+
* Gene: [[Tiso_gene_19780]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_2693]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[synechocystis]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
+
* [[PYRUVDEHYD-PWY]], pyruvate decarboxylation to acetyl CoA: [http://metacyc.org/META/NEW-IMAGE?object=PYRUVDEHYD-PWY PYRUVDEHYD-PWY]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6891]], thiazole biosynthesis II (aerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6891 PWY-6891]
+
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY-6892]], thiazole biosynthesis I (facultative anaerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6892 PWY-6892]
+
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY]
+
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
−
* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[creinhardtii]]
+
*** Tool: [[pantograph]]
−
*** [[synechocystis]]
+
* Category: [[manual]]
−
*** [[esiliculosus]]
+
** Source: [[manual-primary_network]]
−
*** [[athaliana]]
+
* Category: [[annotation]]
−
* [[manual]]:
+
** Source: [[annotation-in-silico_annotation]]
−
** [[primary_network]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12605 12605]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05636 R05636]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02569 R02569]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q01991 Q01991]
 +
** [http://www.uniprot.org/uniprot/P12695 P12695]
 +
** [http://www.uniprot.org/uniprot/Q7M2M8 Q7M2M8]
 +
** [http://www.uniprot.org/uniprot/P10515 P10515]
 +
** [http://www.uniprot.org/uniprot/Q39082 Q39082]
 +
** [http://www.uniprot.org/uniprot/Q9TRP7 Q9TRP7]
 +
** [http://www.uniprot.org/uniprot/Q7M0X6 Q7M0X6]
 +
** [http://www.uniprot.org/uniprot/Q59098 Q59098]
 +
** [http://www.uniprot.org/uniprot/Q9PF09 Q9PF09]
 +
** [http://www.uniprot.org/uniprot/P35489 P35489]
 +
** [http://www.uniprot.org/uniprot/P21883 P21883]
 +
** [http://www.uniprot.org/uniprot/Q59658 Q59658]
 +
** [http://www.uniprot.org/uniprot/Q9JU07 Q9JU07]
 +
** [http://www.uniprot.org/uniprot/Q59298 Q59298]
 +
** [http://www.uniprot.org/uniprot/P45118 P45118]
 +
** [http://www.uniprot.org/uniprot/Q54102 Q54102]
 +
** [http://www.uniprot.org/uniprot/P11961 P11961]
 +
** [http://www.uniprot.org/uniprot/Q59821 Q59821]
 +
** [http://www.uniprot.org/uniprot/P08461 P08461]
 +
** [http://www.uniprot.org/uniprot/Q16791 Q16791]
 +
** [http://www.uniprot.org/uniprot/Q41737 Q41737]
 +
** [http://www.uniprot.org/uniprot/O64968 O64968]
 +
** [http://www.uniprot.org/uniprot/P10802 P10802]
 +
** [http://www.uniprot.org/uniprot/P06959 P06959]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=1-deoxy-d-xylulose_5-phosphate_chloroplast}}
+
{{#set: common name=dihydrolipoamide_acetyltransferase}}
−
{{#set: ec number=EC-2.2.1.7}}
+
{{#set: ec number=EC-2.3.1.12}}
−
{{#set: gene associated=Tiso_gene_17311}}
+
{{#set: gene associated=Tiso_gene_19780|Tiso_gene_2693}}
−
{{#set: in pathway=NONMEVIPP-PWY|PWY-6891|PWY-6892|PYRIDOXSYN-PWY|PWY-7560}}
+
{{#set: in pathway=PYRUVDEHYD-PWY}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 20:11, 21 March 2018

Reaction RXN0-1133

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • dihydrolipoamide_acetyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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