Difference between revisions of "1.3.99.23-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_3392 == * left end position: ** 14616 * transcription direction: ** POSITIVE * right end position: ** 16725 * centisome position: ** 86.746...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.3.99.23-RXN 1.3.99.23-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** carotenoid_isomeras...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_3392 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.3.99.23-RXN 1.3.99.23-RXN] ==
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* left end position:
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* direction:
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** 14616
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** carotenoid_isomerase
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* right end position:
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** carotene_isomerase
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** 16725
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** fad_nad_-binding_oxidoreductase_domain-containing_protein
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* centisome position:
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** carotenoid_isomerase-like_protein
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** 86.746994   
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** all-trans-_-dihydroretinol_saturase
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** ORF
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* ec number:
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** [http://enzyme.expasy.org/EC/1.3.99.23 EC-1.3.99.23]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[3.2.1.47-RXN]]
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* With identifiers:
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** [[pantograph]]-[[athaliana]]
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** 1 [[CPD-13524]][c] '''+''' 1 [[Donor-H2]][c] '''=>''' 1 [[CPD-7247]][c] '''+''' 1 [[Acceptor]][c]
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* [[ALPHAGALACTOSID-RXN]]
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* With common name(s):
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** in-silico_annotation
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** 1 all-trans-retinol[c] '''+''' 1 a reduced electron acceptor[c] '''=>''' 1 all-trans-13,14-dihydroretinol[c] '''+''' 1 an oxidized electron acceptor[c]
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***automated-name-match
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** [[pantograph]]-[[athaliana]]
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== Genes associated with this reaction  ==
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* [[RXN-11501]]
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Genes have been associated with this reaction based on different elements listed below.
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** in-silico_annotation
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* Gene: [[Tiso_gene_3092]]
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***automated-name-match
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** Assignment: EC-NUMBER
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* [[RXN-11502]]
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* Gene: [[Tiso_gene_13367]]
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** in-silico_annotation
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** Source: [[annotation-in-silico_annotation]]
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***automated-name-match
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*** Assignment: EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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* Gene: [[Tiso_gene_9534]]
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* [[RXN-12088]]
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** Source: [[annotation-in-silico_annotation]]
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** in-silico_annotation
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*** Assignment: EC-NUMBER
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***automated-name-match
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* Gene: [[Tiso_gene_16795]]
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* [[RXN-17754]]
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** Source: [[annotation-in-silico_annotation]]
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** in-silico_annotation
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*** Assignment: EC-NUMBER
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***automated-name-match
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* Gene: [[Tiso_gene_917]]
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* [[RXN-17830]]
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** Source: [[annotation-in-silico_annotation]]
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** in-silico_annotation
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*** Assignment: EC-NUMBER
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***automated-name-match
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* Gene: [[Tiso_gene_13369]]
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== Pathways associated ==
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-6527]]
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*** Assignment: EC-NUMBER
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* [[PWY0-1301]]
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* Gene: [[Tiso_gene_16794]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways ==
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=14616}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19193 19193]
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{{#set: right end position=16725}}
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* LIGAND-RXN:
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{{#set: centisome position=86.746994    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R07163 R07163]
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{{#set: reaction associated=3.2.1.47-RXN|ALPHAGALACTOSID-RXN|RXN-11501|RXN-11502|RXN-12088|RXN-17754|RXN-17830}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: pathway associated=PWY-6527|PWY0-1301}}
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{{#set: common name=carotenoid_isomerase}}
 +
{{#set: common name=carotene_isomerase}}
 +
{{#set: common name=fad_nad_-binding_oxidoreductase_domain-containing_protein}}
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{{#set: common name=carotenoid_isomerase-like_protein}}
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{{#set: common name=all-trans-_-dihydroretinol_saturase}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-1.3.99.23}}
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{{#set: gene associated=Tiso_gene_3092|Tiso_gene_13367|Tiso_gene_9534|Tiso_gene_16795|Tiso_gene_917|Tiso_gene_13369|Tiso_gene_16794}}
 +
{{#set: in pathway=}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:12, 21 March 2018

Reaction 1.3.99.23-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • carotenoid_isomerase
    • carotene_isomerase
    • fad_nad_-binding_oxidoreductase_domain-containing_protein
    • carotenoid_isomerase-like_protein
    • all-trans-_-dihydroretinol_saturase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 all-trans-retinol[c] + 1 a reduced electron acceptor[c] => 1 all-trans-13,14-dihydroretinol[c] + 1 an oxidized electron acceptor[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links







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