Difference between revisions of "3.1.26.3-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRIBFAICARPISOM-RXN PRIBFAICARPISOM-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phospho...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.3-RXN 3.1.26.3-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** low_quality_protein:_...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRIBFAICARPISOM-RXN PRIBFAICARPISOM-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.3-RXN 3.1.26.3-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** phosphoribosylformimino-5-aminoimidazole_carboxamide_ribonucleotide_isomerase
+
** low_quality_protein:_ribonuclease_3-like
 +
** mini-ribonuclease_3
 +
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/5.3.1.16 EC-5.3.1.16]
+
** [http://enzyme.expasy.org/EC/3.1.26.3 EC-3.1.26.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PHOSPHORIBOSYL-FORMIMINO-AICAR-P]][c] '''=>''' 1 [[PHOSPHORIBULOSYL-FORMIMINO-AICAR-P]][c]
+
** 1 [[RNASE-III-MRNA-PROCESSING-SUBSTRATE]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[RNASE-III-PROCESSING-PRODUCT-MRNA]][c] '''+''' 2 [[mRNA-Fragments]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide[c] '''=>''' 1 phosphoribulosylformimino-AICAR-phosphate[c]
+
** 1 RNase III mRNA processing substrate[c] '''+''' 2 H2O[c] '''=>''' 1 RNase III processing product mRNA[c] '''+''' 2 an mRNA fragment[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_11199]]
+
* Gene: [[Tiso_gene_10131]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_1565]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_6282]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
** EXPERIMENTAL_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_10752]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[synechocystis]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_10753]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10649]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_608]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[HISTSYN-PWY]], L-histidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HISTSYN-PWY HISTSYN-PWY]
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[creinhardtii]]
+
*** Tool: [[pathwaytools]]
−
*** [[synechocystis]]
+
−
*** [[athaliana]]
+
−
*** [[esiliculosus]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15469 15469]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R04640 R04640]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q02131 Q02131]
+
** [http://www.uniprot.org/uniprot/Q9PM40 Q9PM40]
−
** [http://www.uniprot.org/uniprot/Q9JVH4 Q9JVH4]
+
** [http://www.uniprot.org/uniprot/P51833 P51833]
−
** [http://www.uniprot.org/uniprot/Q9PM74 Q9PM74]
+
** [http://www.uniprot.org/uniprot/Q9CHD0 Q9CHD0]
−
** [http://www.uniprot.org/uniprot/P44435 P44435]
+
** [http://www.uniprot.org/uniprot/Q9JVD3 Q9JVD3]
−
** [http://www.uniprot.org/uniprot/P10372 P10372]
+
** [http://www.uniprot.org/uniprot/P44441 P44441]
−
** [http://www.uniprot.org/uniprot/P10371 P10371]
+
** [http://www.uniprot.org/uniprot/P0A7Y0 P0A7Y0]
−
** [http://www.uniprot.org/uniprot/P16250 P16250]
+
** [http://www.uniprot.org/uniprot/P09155 P09155]
−
** [http://www.uniprot.org/uniprot/P05324 P05324]
+
** [http://www.uniprot.org/uniprot/Q52698 Q52698]
−
** [http://www.uniprot.org/uniprot/P26720 P26720]
+
** [http://www.uniprot.org/uniprot/Q49034 Q49034]
−
** [http://www.uniprot.org/uniprot/P50936 P50936]
+
** [http://www.uniprot.org/uniprot/O69469 O69469]
−
** [http://www.uniprot.org/uniprot/P74561 P74561]
+
−
** [http://www.uniprot.org/uniprot/O82782 O82782]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=phosphoribosylformimino-5-aminoimidazole_carboxamide_ribonucleotide_isomerase}}
+
{{#set: common name=low_quality_protein:_ribonuclease_3-like}}
−
{{#set: ec number=EC-5.3.1.16}}
+
{{#set: common name=mini-ribonuclease_3}}
−
{{#set: gene associated=Tiso_gene_11199|Tiso_gene_1565}}
+
{{#set: common name=ORF}}
−
{{#set: in pathway=HISTSYN-PWY}}
+
{{#set: ec number=EC-3.1.26.3}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: gene associated=Tiso_gene_10131|Tiso_gene_6282|Tiso_gene_10752|Tiso_gene_10753|Tiso_gene_10649|Tiso_gene_608}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 20:12, 21 March 2018

Reaction 3.1.26.3-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • low_quality_protein:_ribonuclease_3-like
    • mini-ribonuclease_3
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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