Difference between revisions of "SE-2"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=F16ALDOLASE-RXN F16ALDOLASE-RXN] == * direction: ** REVERSIBLE * common name: ** fructose-bisphosph...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SE-2 SE-2] == * smiles: ** [Se--] * common name: ** selenide * inchi key: ** InChIKey=HMUBNCUQS...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=F16ALDOLASE-RXN F16ALDOLASE-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SE-2 SE-2] ==
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* direction:
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* smiles:
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** REVERSIBLE
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** [Se--]
 
* common name:
 
* common name:
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** fructose-bisphosphate_aldolase
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** selenide
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* ec number:
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* inchi key:
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** [http://enzyme.expasy.org/EC/4.1.2.13 EC-4.1.2.13]
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** InChIKey=HMUBNCUQSSTAIB-UHFFFAOYSA-N
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* molecular weight:
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** 78.96   
 
* Synonym(s):
 
* Synonym(s):
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** selenide ion
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** Se-2
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[2.7.9.3-RXN]]
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** 1 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''<=>''' 1 [[GAP]][c] '''+''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 fructose 1,6-bisphosphate[c] '''<=>''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 glycerone phosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_14568]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_9118]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_9119]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_9179]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_12272]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_65]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
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** '''9''' reactions found over '''10''' reactions in the full pathway
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* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
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** '''12''' reactions found over '''12''' reactions in the full pathway
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* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
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** '''8''' reactions found over '''14''' reactions in the full pathway
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* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
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** '''11''' reactions found over '''11''' reactions in the full pathway
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* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
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** '''11''' reactions found over '''12''' reactions in the full pathway
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* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
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** '''10''' reactions found over '''12''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* CAS : 22541-48-6
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14729 14729]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=107674 107674]
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** [http://www.genome.jp/dbget-bin/www_bget?R01068 R01068]
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* CHEMSPIDER:
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* UNIPROT:
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** [http://www.chemspider.com/Chemical-Structure.96846.html 96846]
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** [http://www.uniprot.org/uniprot/Q7LZE8 Q7LZE8]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q7M2K6 Q7M2K6]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15076 15076]
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** [http://www.uniprot.org/uniprot/P07764 P07764]
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* METABOLIGHTS : MTBLC15076
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** [http://www.uniprot.org/uniprot/Q9URB4 Q9URB4]
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{{#set: smiles=[Se--]}}
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** [http://www.uniprot.org/uniprot/P14223 P14223]
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{{#set: common name=selenide}}
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** [http://www.uniprot.org/uniprot/Q07159 Q07159]
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{{#set: inchi key=InChIKey=HMUBNCUQSSTAIB-UHFFFAOYSA-N}}
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** [http://www.uniprot.org/uniprot/P07752 P07752]
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{{#set: molecular weight=78.96    }}
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** [http://www.uniprot.org/uniprot/P14540 P14540]
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{{#set: common name=selenide ion|Se-2}}
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** [http://www.uniprot.org/uniprot/P07341 P07341]
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{{#set: consumed by=2.7.9.3-RXN}}
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** [http://www.uniprot.org/uniprot/P0AB71 P0AB71]
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** [http://www.uniprot.org/uniprot/P04075 P04075]
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** [http://www.uniprot.org/uniprot/P05062 P05062]
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** [http://www.uniprot.org/uniprot/P09972 P09972]
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** [http://www.uniprot.org/uniprot/P05064 P05064]
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** [http://www.uniprot.org/uniprot/P05063 P05063]
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** [http://www.uniprot.org/uniprot/P22197 P22197]
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** [http://www.uniprot.org/uniprot/P00883 P00883]
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** [http://www.uniprot.org/uniprot/P27995 P27995]
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** [http://www.uniprot.org/uniprot/P05065 P05065]
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** [http://www.uniprot.org/uniprot/P00884 P00884]
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** [http://www.uniprot.org/uniprot/P09117 P09117]
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** [http://www.uniprot.org/uniprot/P17784 P17784]
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** [http://www.uniprot.org/uniprot/P29356 P29356]
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** [http://www.uniprot.org/uniprot/P16096 P16096]
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** [http://www.uniprot.org/uniprot/P08440 P08440]
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** [http://www.uniprot.org/uniprot/P44429 P44429]
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** [http://www.uniprot.org/uniprot/P13243 P13243]
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** [http://www.uniprot.org/uniprot/O51401 O51401]
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** [http://www.uniprot.org/uniprot/P47269 P47269]
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** [http://www.uniprot.org/uniprot/Q9CED4 Q9CED4]
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** [http://www.uniprot.org/uniprot/Q9JW15 Q9JW15]
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** [http://www.uniprot.org/uniprot/Q59100 Q59100]
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** [http://www.uniprot.org/uniprot/Q59101 Q59101]
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** [http://www.uniprot.org/uniprot/Q7M4Z5 Q7M4Z5]
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** [http://www.uniprot.org/uniprot/Q7M4Z4 Q7M4Z4]
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** [http://www.uniprot.org/uniprot/P19537 P19537]
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** [http://www.uniprot.org/uniprot/Q01516 Q01516]
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** [http://www.uniprot.org/uniprot/Q01517 Q01517]
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** [http://www.uniprot.org/uniprot/Q91384 Q91384]
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** [http://www.uniprot.org/uniprot/P52210 P52210]
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** [http://www.uniprot.org/uniprot/Q42690 Q42690]
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** [http://www.uniprot.org/uniprot/P53447 P53447]
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** [http://www.uniprot.org/uniprot/Q7LZE9 Q7LZE9]
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** [http://www.uniprot.org/uniprot/P53818 P53818]
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** [http://www.uniprot.org/uniprot/P46257 P46257]
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** [http://www.uniprot.org/uniprot/P46256 P46256]
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** [http://www.uniprot.org/uniprot/Q42476 Q42476]
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** [http://www.uniprot.org/uniprot/P75089 P75089]
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** [http://www.uniprot.org/uniprot/O22486 O22486]
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** [http://www.uniprot.org/uniprot/Q40677 Q40677]
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** [http://www.uniprot.org/uniprot/O65581 O65581]
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** [http://www.uniprot.org/uniprot/Q9SVJ6 Q9SVJ6]
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** [http://www.uniprot.org/uniprot/P93565 P93565]
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** [http://www.uniprot.org/uniprot/P50923 P50923]
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** [http://www.uniprot.org/uniprot/O04975 O04975]
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** [http://www.uniprot.org/uniprot/P36580 P36580]
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** [http://www.uniprot.org/uniprot/P53444 P53444]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=fructose-bisphosphate_aldolase}}
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{{#set: ec number=EC-4.1.2.13}}
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{{#set: gene associated=Tiso_gene_14568|Tiso_gene_9118|Tiso_gene_9119|Tiso_gene_9179|Tiso_gene_12272|Tiso_gene_65}}
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{{#set: in pathway=PWY-1042|P341-PWY|GLUCONEO-PWY|GLYCOLYSIS|SUCSYN-PWY|PWY-7385|ANAGLYCOLYSIS-PWY|CALVIN-PWY|PWY-1861|PWY-6142|PWY-5484|P185-PWY|PWY66-399}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 21:19, 21 March 2018

Metabolite SE-2

  • smiles:
    • [Se--]
  • common name:
    • selenide
  • inchi key:
    • InChIKey=HMUBNCUQSSTAIB-UHFFFAOYSA-N
  • molecular weight:
    • 78.96
  • Synonym(s):
    • selenide ion
    • Se-2

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 22541-48-6
  • PUBCHEM:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC15076




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