Difference between revisions of "Tiso gene 8625"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASNSYNA-RXN ASNSYNA-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** asparagine_synthetase *...")
 
(Created page with "Category:Gene == Gene Tiso_gene_8625 == * right end position: ** 2577 * transcription direction: ** NEGATIVE * left end position: ** 125 * centisome position: ** 1.2429154...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASNSYNA-RXN ASNSYNA-RXN] ==
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== Gene Tiso_gene_8625 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 2577
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* common name:
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* transcription direction:
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** asparagine_synthetase
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** NEGATIVE
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** asparagine_synthetase_domaincontaining_protein_putat
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* left end position:
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** aspartate-ammonia_ligase
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** 125
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/6.3.1.1 EC-6.3.1.1]
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** 1.2429154   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[PYRROLINECARBREDUCT-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[L-ASPARTATE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ASN]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 ATP[c] '''+''' 1 ammonium[c] '''+''' 1 L-aspartate[c] '''=>''' 1 H+[c] '''+''' 1 L-asparagine[c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[R01251]]
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* [[Tiso_gene_7495]]
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** Source: [[orthology-synechocystis]]
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** IN-SILICO_ANNOTATION
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* Reaction: [[RXN66-546]]
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***EC-NUMBER
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: ec-number
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* [[Tiso_gene_1462]]
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** Source: [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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== Pathways associated ==
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* [[Tiso_gene_2973]]
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* [[PROSYN-PWY]]
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** IN-SILICO_ANNOTATION
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* [[ARG-PRO-PWY]]
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***EC-NUMBER
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* [[PWY-6344]]
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** EXPERIMENTAL_ANNOTATION
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* [[PWY-4981]]
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***EC-NUMBER
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* [[PWY-3341]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[ASPARAGINESYN-PWY]], L-asparagine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGINESYN-PWY ASPARAGINESYN-PWY]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=2577}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11372 11372]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=125}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00483 R00483]
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{{#set: centisome position=1.2429154    }}
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* UNIPROT:
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{{#set: reaction associated=PYRROLINECARBREDUCT-RXN|R01251|RXN66-546}}
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** [http://www.uniprot.org/uniprot/P00963 P00963]
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{{#set: pathway associated=PROSYN-PWY|ARG-PRO-PWY|PWY-6344|PWY-4981|PWY-3341}}
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** [http://www.uniprot.org/uniprot/P08243 P08243]
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** [http://www.uniprot.org/uniprot/P44338 P44338]
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** [http://www.uniprot.org/uniprot/P49088 P49088]
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** [http://www.uniprot.org/uniprot/P54264 P54264]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=asparagine_synthetase}}
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{{#set: common name=asparagine_synthetase_domaincontaining_protein_putat}}
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{{#set: common name=aspartate-ammonia_ligase}}
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{{#set: ec number=EC-6.3.1.1}}
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{{#set: gene associated=Tiso_gene_7495|Tiso_gene_1462|Tiso_gene_2973}}
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{{#set: in pathway=ASPARAGINESYN-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:20, 21 March 2018

Gene Tiso_gene_8625

  • right end position:
    • 2577
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 125
  • centisome position:
    • 1.2429154
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_8625&oldid=47860"