Difference between revisions of "Tiso gene 15256"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOLEUCINE--TRNA-LIGASE-RXN ISOLEUCINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
 
(Created page with "Category:Gene == Gene Tiso_gene_15256 == * right end position: ** 5023 * transcription direction: ** NEGATIVE * left end position: ** 2323 * centisome position: ** 45.2914...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOLEUCINE--TRNA-LIGASE-RXN ISOLEUCINE--TRNA-LIGASE-RXN] ==
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== Gene Tiso_gene_15256 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5023
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* common name:
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* transcription direction:
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** isoleucine--trna_cytoplasmic
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** NEGATIVE
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** isoleucine--trna_ligase
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* left end position:
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* ec number:
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** 2323
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** [http://enzyme.expasy.org/EC/6.1.1.5 EC-6.1.1.5]
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* centisome position:
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** 45.29148   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ACID-PHOSPHATASE-RXN]]
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** 1 [[ILE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[ILE-tRNAs]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[Charged-ILE-tRNAs]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 L-isoleucine[c] '''+''' 1 ATP[c] '''+''' 1 a tRNAile[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 an L-isoleucyl-[tRNAile][c]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-5822]]
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== Genes associated with this reaction  ==
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** Source: [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** Assignment: ec-number
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* [[Tiso_gene_11779]]
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* Reaction: [[RXNQT-4191]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-esiliculosus]]
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***EC-NUMBER
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== Pathways associated ==
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** EXPERIMENTAL_ANNOTATION
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* [[PWY-6907]]
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***EC-NUMBER
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* [[PWY-6348]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-6908]]
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* [[Tiso_gene_12496]]
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* [[PWY-7356]]
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** IN-SILICO_ANNOTATION
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* [[NAD-BIOSYNTHESIS-II]]
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***EC-NUMBER
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* [[PWY-5083]]
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** EXPERIMENTAL_ANNOTATION
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* [[NADPHOS-DEPHOS-PWY]]
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=5023}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11060 11060]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=2323}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03656 R03656]
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{{#set: centisome position=45.29148    }}
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* UNIPROT:
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{{#set: reaction associated=ACID-PHOSPHATASE-RXN|RXN-5822|RXNQT-4191}}
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** [http://www.uniprot.org/uniprot/P18330 P18330]
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{{#set: pathway associated=PWY-6907|PWY-6348|PWY-6908|PWY-7356|NAD-BIOSYNTHESIS-II|PWY-5083|NADPHOS-DEPHOS-PWY}}
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** [http://www.uniprot.org/uniprot/P36422 P36422]
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** [http://www.uniprot.org/uniprot/O29622 O29622]
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** [http://www.uniprot.org/uniprot/P47587 P47587]
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** [http://www.uniprot.org/uniprot/Q9ZCU4 Q9ZCU4]
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** [http://www.uniprot.org/uniprot/P46213 P46213]
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** [http://www.uniprot.org/uniprot/P41257 P41257]
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** [http://www.uniprot.org/uniprot/Q9JVY4 Q9JVY4]
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** [http://www.uniprot.org/uniprot/Q58357 Q58357]
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** [http://www.uniprot.org/uniprot/O83466 O83466]
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** [http://www.uniprot.org/uniprot/Q9Z972 Q9Z972]
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** [http://www.uniprot.org/uniprot/P56456 P56456]
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** [http://www.uniprot.org/uniprot/O58792 O58792]
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** [http://www.uniprot.org/uniprot/O84022 O84022]
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** [http://www.uniprot.org/uniprot/Q9ZJJ1 Q9ZJJ1]
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** [http://www.uniprot.org/uniprot/O66651 O66651]
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** [http://www.uniprot.org/uniprot/Q9CEH8 Q9CEH8]
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** [http://www.uniprot.org/uniprot/O27428 O27428]
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** [http://www.uniprot.org/uniprot/Q45477 Q45477]
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** [http://www.uniprot.org/uniprot/O51773 O51773]
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** [http://www.uniprot.org/uniprot/P46207 P46207]
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** [http://www.uniprot.org/uniprot/P41252 P41252]
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** [http://www.uniprot.org/uniprot/P41972 P41972]
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** [http://www.uniprot.org/uniprot/P48526 P48526]
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** [http://www.uniprot.org/uniprot/P75258 P75258]
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** [http://www.uniprot.org/uniprot/P73505 P73505]
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** [http://www.uniprot.org/uniprot/Q49024 Q49024]
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** [http://www.uniprot.org/uniprot/Q49074 Q49074]
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** [http://www.uniprot.org/uniprot/P43824 P43824]
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** [http://www.uniprot.org/uniprot/P09436 P09436]
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** [http://www.uniprot.org/uniprot/P00956 P00956]
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** [http://www.uniprot.org/uniprot/Q94425 Q94425]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=isoleucine--trna_cytoplasmic}}
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{{#set: common name=isoleucine--trna_ligase}}
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{{#set: ec number=EC-6.1.1.5}}
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{{#set: gene associated=Tiso_gene_11779|Tiso_gene_12496}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:24, 21 March 2018

Gene Tiso_gene_15256

  • right end position:
    • 5023
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 2323
  • centisome position:
    • 45.29148
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_15256&oldid=48551"