Difference between revisions of "APIGNAR-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.1.148-RXN 2.7.1.148-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 4-diphosphocytidyl-...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Naringenin chalcone iso...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.1.148-RXN 2.7.1.148-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 4-diphosphocytidyl-2-c-methyl-d-erythritol_kinase
+
** Naringenin chalcone isomerase
 +
** atp-dependent_rna_helicase_dhx30-like
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.1.148 EC-2.7.1.148]
+
** [http://enzyme.expasy.org/EC/5.5.1.6 EC-5.5.1.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[4-CYTIDINE-5-DIPHOSPHO-2-C]][c] '''=>''' 1 [[2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[APIGENIN]][c] '''=>''' 1 [[NARINGENIN-CMPD]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] '''=>''' 1 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] '''+''' 1 ADP[c] '''+''' 1 H+[c]
+
** 1 2',4,4',6'-tetrahydroxychalcone[c] '''=>''' 1 (2S)-naringenin[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13463]]
+
* Gene: [[Tiso_gene_13414]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
* Gene: [[Tiso_gene_9838]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
+
* [[PWY-7397]], naringenin biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7397 PWY-7397]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
+
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787]
 +
** '''5''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[creinhardtii]]
+
*** Tool: [[pantograph]]
−
*** [[synechocystis]]
+
* Category: [[annotation]]
−
*** [[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[athaliana]]
+
*** Tool: [[pathwaytools]]
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18437 18437]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05634 R05634]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02446 R02446]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P11650 P11650]
 +
** [http://www.uniprot.org/uniprot/P11651 P11651]
 +
** [http://www.uniprot.org/uniprot/P41088 P41088]
 +
** [http://www.uniprot.org/uniprot/P14298 P14298]
 +
** [http://www.uniprot.org/uniprot/Q42925 Q42925]
 +
** [http://www.uniprot.org/uniprot/Q42926 Q42926]
 +
** [http://www.uniprot.org/uniprot/Q08704 Q08704]
 +
** [http://www.uniprot.org/uniprot/P28012 P28012]
 +
** [http://www.uniprot.org/uniprot/P41089 P41089]
 +
** [http://www.uniprot.org/uniprot/O81980 O81980]
 +
** [http://www.uniprot.org/uniprot/O22604 O22604]
 +
** [http://www.uniprot.org/uniprot/O22651 O22651]
 +
** [http://www.uniprot.org/uniprot/Q43754 Q43754]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=4-diphosphocytidyl-2-c-methyl-d-erythritol_kinase}}
+
{{#set: common name=Naringenin chalcone isomerase}}
−
{{#set: ec number=EC-2.7.1.148}}
+
{{#set: common name=atp-dependent_rna_helicase_dhx30-like}}
−
{{#set: gene associated=Tiso_gene_13463}}
+
{{#set: ec number=EC-5.5.1.6}}
−
{{#set: in pathway=NONMEVIPP-PWY|PWY-7560}}
+
{{#set: gene associated=Tiso_gene_13414|Tiso_gene_9838}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=PWY-7397|PWY1F-FLAVSYN|PWY-6787}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 19:07, 21 March 2018

Reaction APIGNAR-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Naringenin chalcone isomerase
    • atp-dependent_rna_helicase_dhx30-like
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 2',4,4',6'-tetrahydroxychalcone[c] => 1 (2S)-naringenin[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7397, naringenin biosynthesis (engineered): PWY-7397
    • 2 reactions found over 4 reactions in the full pathway
  • PWY1F-FLAVSYN, flavonoid biosynthesis: PWY1F-FLAVSYN
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6787, flavonoid biosynthesis (in equisetum): PWY-6787
    • 5 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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