Difference between revisions of "PWY-6960"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-4821 PWY-4821] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-82115 TAX-8...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-RXN RIBOKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** at1g17160 ** rib...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-4821 PWY-4821] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-RXN RIBOKIN-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-82115 TAX-82115]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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* common name:
 
* common name:
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** UDP-D-xylose biosynthesis
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** ORF
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** at1g17160
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** ribokinase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.1.15 EC-2.7.1.15]
 
* Synonym(s):
 
* Synonym(s):
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** UDP-xylose biosynthesis
 
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** UDPXyl biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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* '''1''' reaction(s) found
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* With identifiers:
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** [[UDP-GLUCURONATE-DECARBOXYLASE-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[CPD-10330]][c] '''=>''' 1 [[CPD-15318]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
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== Reaction(s) not found ==
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* With common name(s):
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* '''1''' reaction(s) not found
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** 1 ATP[c] '''+''' 1 α-D-ribofuranose[c] '''=>''' 1 α-D-ribose 5-phosphate[c] '''+''' 1 ADP[c] '''+''' 1 H+[c]
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** [http://metacyc.org/META/NEW-IMAGE?object=PWY-7346 PWY-7346]
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 +
== Genes associated with this reaction ==
 +
Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_17974]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_81]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_7682]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_82]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_18204]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_911]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
 +
== Pathways  ==
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* [[RIBOKIN-PWY]], ribose degradation: [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-PWY RIBOKIN-PWY]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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* ARACYC:
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* RHEA:
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-4821 PWY-4821]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13697 13697]
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{{#set: taxonomic range=TAX-82115}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2759}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01051 R01051]
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{{#set: common name=UDP-D-xylose biosynthesis}}
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* UNIPROT:
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{{#set: common name=UDP-xylose biosynthesis|UDPXyl biosynthesis}}
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** [http://www.uniprot.org/uniprot/P44331 P44331]
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/P36945 P36945]
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{{#set: reaction not found=1}}
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** [http://www.uniprot.org/uniprot/Q57849 Q57849]
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** [http://www.uniprot.org/uniprot/Q9CF42 Q9CF42]
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** [http://www.uniprot.org/uniprot/P25332 P25332]
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** [http://www.uniprot.org/uniprot/P0A9J6 P0A9J6]
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** [http://www.uniprot.org/uniprot/O93727 O93727]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=ORF}}
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{{#set: common name=at1g17160}}
 +
{{#set: common name=ribokinase}}
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{{#set: ec number=EC-2.7.1.15}}
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{{#set: gene associated=Tiso_gene_17974|Tiso_gene_81|Tiso_gene_7682|Tiso_gene_82|Tiso_gene_18204|Tiso_gene_911}}
 +
{{#set: in pathway=RIBOKIN-PWY}}
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{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 15:49, 10 January 2018

Reaction RIBOKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • at1g17160
    • ribokinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 α-D-ribofuranose[c] => 1 α-D-ribose 5-phosphate[c] + 1 ADP[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links







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