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| − | [[Category:Reaction]] | + | [[Category:Pathway]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYRIBONUCSYN-RXN GLYRIBONUCSYN-RXN] == | + | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5337 PWY-5337] == |
| − | * direction: | + | * taxonomic range: |
| − | ** LEFT-TO-RIGHT | + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-3398] |
| | * common name: | | * common name: |
| − | ** phosphoribosylamine--glycine_ligase | + | ** stachyose biosynthesis |
| − | * ec number:
| + | |
| − | ** [http://enzyme.expasy.org/EC/6.3.4.13 EC-6.3.4.13]
| + | |
| | * Synonym(s): | | * Synonym(s): |
| | + | ** raffinose biosynthesis |
| | | | |
| − | == Reaction Formula == | + | == Reaction(s) found == |
| − | * With identifiers: | + | * '''2''' reaction(s) found |
| − | ** 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c]
| + | ** [[2.4.1.67-RXN]] |
| − | * With common name(s):
| + | ** [[2.4.1.123-RXN]] |
| − | ** 1 5-phospho-β-D-ribosylamine[c] '''+''' 1 ATP[c] '''+''' 1 glycine[c] '''=>''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 1 H+[c] '''+''' 1 N1-(5-phospho-β-D-ribosyl)glycinamide[c] | + | == Reaction(s) not found == |
| − | | + | * '''1''' reaction(s) not found |
| − | == Genes associated with this reaction ==
| + | ** [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.82-RXN 2.4.1.82-RXN] |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | |
| − | * [[Tiso_gene_1369]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** EXPERIMENTAL_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** [[pantograph]]-[[athaliana]]
| + | |
| − | ** [[pantograph]]-[[esiliculosus]] | + | |
| − | == Pathways == | + | |
| − | * [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
| + | |
| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
| + | |
| − | * [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122] | + | |
| − | ** '''4''' reactions found over '''5''' reactions in the full pathway
| + | |
| − | * [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
| + | |
| − | ** '''6''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * [[orthology]]:
| + | |
| − | ** [[pantograph]]:
| + | |
| − | *** [[athaliana]]
| + | |
| − | *** [[esiliculosus]]
| + | |
| − | * [[manual]]:
| + | |
| − | ** [[primary_network]]
| + | |
| − | * [[annotation]]:
| + | |
| − | ** [[pathwaytools]]:
| + | |
| − | *** [[experimental_annotation]]
| + | |
| − | *** [[in-silico_annotation]]
| + | |
| | == External links == | | == External links == |
| − | * RHEA: | + | * ARACYC: |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17453 17453] | + | ** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5337 PWY-5337] |
| − | * LIGAND-RXN:
| + | {{#set: taxonomic range=TAX-3398}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R04144 R04144]
| + | {{#set: common name=stachyose biosynthesis}} |
| − | * UNIPROT:
| + | {{#set: common name=raffinose biosynthesis}} |
| − | ** [http://www.uniprot.org/uniprot/P07244 P07244]
| + | {{#set: reaction found=2}} |
| − | ** [http://www.uniprot.org/uniprot/Q58347 Q58347]
| + | {{#set: reaction not found=1}} |
| − | ** [http://www.uniprot.org/uniprot/P12039 P12039]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P21872 P21872]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P15640 P15640]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P00967 P00967]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P16340 P16340]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P22102 P22102]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9JWU6 Q9JWU6]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P43845 P43845]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9PN47 Q9PN47]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q64737 Q64737]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P20772 P20772]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P26977 P26977]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q59492 Q59492]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P74232 P74232]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q42804 Q42804]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P52421 P52421]
| + | |
| − | {{#set: direction=LEFT-TO-RIGHT}} | + | |
| − | {{#set: common name=phosphoribosylamine--glycine_ligase}} | + | |
| − | {{#set: ec number=EC-6.3.4.13}} | + | |
| − | {{#set: gene associated=Tiso_gene_1369}} | + | |
| − | {{#set: in pathway=PWY-6121|PWY-6122|PWY-6277}} | + | |
| − | {{#set: reconstruction category=orthology}}
| + | |
| − | {{#set: reconstruction tool=pantograph}}
| + | |
| − | {{#set: reconstruction source=athaliana|esiliculosus}}
| + | |
| − | {{#set: reconstruction category=manual}}
| + | |
| − | {{#set: reconstruction source=primary_network}}
| + | |
| − | {{#set: reconstruction category=annotation}}
| + | |
| − | {{#set: reconstruction tool=pathwaytools}}
| + | |
| − | {{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
| + | |
