Difference between revisions of "PWY-6960"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-RXN RIBOKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** at1g17160 ** rib...")
(Created page with "Category:Gene == Gene Tiso_gene_17987 == * left end position: ** 15 * transcription direction: ** POSITIVE * right end position: ** 2827 * centisome position: ** 0.4501800...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-RXN RIBOKIN-RXN] ==
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== Gene Tiso_gene_17987 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 15
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* common name:
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* transcription direction:
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** ORF
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** POSITIVE
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** at1g17160
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* right end position:
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** ribokinase
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** 2827
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.7.1.15 EC-2.7.1.15]
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** 0.45018005   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[PROTEIN-TYROSINE-PHOSPHATASE-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[CPD-10330]][c] '''=>''' 1 [[CPD-15318]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 ATP[c] '''+''' 1 α-D-ribofuranose[c] '''=>''' 1 α-D-ribose 5-phosphate[c] '''+''' 1 ADP[c] '''+''' 1 H+[c]
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== Pathways associated ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_17974]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_81]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_7682]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_82]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_18204]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_911]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways ==
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* [[RIBOKIN-PWY]], ribose degradation: [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-PWY RIBOKIN-PWY]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=15}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13697 13697]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=2827}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01051 R01051]
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{{#set: centisome position=0.45018005    }}
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* UNIPROT:
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{{#set: reaction associated=PROTEIN-TYROSINE-PHOSPHATASE-RXN}}
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** [http://www.uniprot.org/uniprot/P44331 P44331]
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** [http://www.uniprot.org/uniprot/P36945 P36945]
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** [http://www.uniprot.org/uniprot/Q57849 Q57849]
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** [http://www.uniprot.org/uniprot/Q9CF42 Q9CF42]
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** [http://www.uniprot.org/uniprot/P25332 P25332]
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** [http://www.uniprot.org/uniprot/P0A9J6 P0A9J6]
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** [http://www.uniprot.org/uniprot/O93727 O93727]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: common name=at1g17160}}
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{{#set: common name=ribokinase}}
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{{#set: ec number=EC-2.7.1.15}}
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{{#set: gene associated=Tiso_gene_17974|Tiso_gene_81|Tiso_gene_7682|Tiso_gene_82|Tiso_gene_18204|Tiso_gene_911}}
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{{#set: in pathway=RIBOKIN-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 18:00, 18 March 2018

Gene Tiso_gene_17987

  • left end position:
    • 15
  • transcription direction:
    • POSITIVE
  • right end position:
    • 2827
  • centisome position:
    • 0.45018005
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6960&oldid=21260"