Difference between revisions of "SO3"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16659 RXN-16659] == * direction: ** LEFT-TO-RIGHT * common name: ** peptidoglycan transpeptidas...")
(Created page with "Category:Gene == Gene Tiso_gene_17272 == * left end position: ** 2045 * transcription direction: ** POSITIVE * right end position: ** 2201 * centisome position: ** 53.6604...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16659 RXN-16659] ==
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== Gene Tiso_gene_17272 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 2045
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* common name:
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* transcription direction:
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** peptidoglycan transpeptidase (Gram-negative bacteria)
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** POSITIVE
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** beta-lactamase
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* right end position:
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* ec number:
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** 2201
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** [http://enzyme.expasy.org/EC/3.4.16.4 EC-3.4.16.4]
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* centisome position:
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** 53.660458   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[CDPKIN-RXN]]
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** 1 [[CPD-17927]][c] '''+''' 1 [[CPD-17931]][c] '''=>''' 1 [[CPD-17932]][c] '''+''' 1 [[D-ALANINE]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine) pentapeptide[c] '''+''' 1 a peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide[c] '''=>''' 1 a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)[c] '''+''' 1 D-alanine[c]
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* [[DADPKIN-RXN]]
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** in-silico_annotation
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== Genes associated with this reaction  ==
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***ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* [[DCDPKIN-RXN]]
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* [[Tiso_gene_18870]]
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** in-silico_annotation
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** IN-SILICO_ANNOTATION
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***ec-number
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***EC-NUMBER
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* [[DGDPKIN-RXN]]
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== Pathways ==
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** in-silico_annotation
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* [[PWY0-1586]], peptidoglycan maturation (meso-diaminopimelate containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1586 PWY0-1586]
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***ec-number
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** '''2''' reactions found over '''12''' reactions in the full pathway
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* [[DTDPKIN-RXN]]
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== Reconstruction information  ==
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** in-silico_annotation
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* [[annotation]]:
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***ec-number
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** [[pathwaytools]]:
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* [[DUDPKIN-RXN]]
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*** [[in-silico_annotation]]
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** in-silico_annotation
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***ec-number
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* [[GDPKIN-RXN]]
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** in-silico_annotation
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***ec-number
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* [[NUCLEOSIDE-DIP-KIN-RXN]]
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** in-silico_annotation
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***ec-number
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* [[RXN-14120]]
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** in-silico_annotation
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***ec-number
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* [[RXN-14228]]
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** in-silico_annotation
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***ec-number
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* [[UDPKIN-RXN]]
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** in-silico_annotation
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***ec-number
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== Pathways associated ==
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* [[PWY-7210]]
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* [[PWY-7198]]
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* [[PWY-7176]]
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* [[PWY-7220]]
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* [[PWY-7184]]
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* [[PWY-7222]]
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* [[PWY-7205]]
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* [[PWY-7224]]
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* [[PWY-7197]]
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* [[PWY0-166]]
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* [[PWY-7227]]
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* [[PPGPPMET-PWY]]
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* [[PWY-7226]]
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* [[PWY-7221]]
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* [[PWY-6545]]
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* [[PWY-7187]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=2045}}
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{{#set: common name=peptidoglycan transpeptidase (Gram-negative bacteria)}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=beta-lactamase}}
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{{#set: right end position=2201}}
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{{#set: ec number=EC-3.4.16.4}}
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{{#set: centisome position=53.660458    }}
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{{#set: gene associated=Tiso_gene_18870}}
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{{#set: reaction associated=CDPKIN-RXN|DADPKIN-RXN|DCDPKIN-RXN|DGDPKIN-RXN|DTDPKIN-RXN|DUDPKIN-RXN|GDPKIN-RXN|NUCLEOSIDE-DIP-KIN-RXN|RXN-14120|RXN-14228|UDPKIN-RXN}}
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{{#set: in pathway=PWY0-1586}}
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{{#set: pathway associated=PWY-7210|PWY-7198|PWY-7176|PWY-7220|PWY-7184|PWY-7222|PWY-7205|PWY-7224|PWY-7197|PWY0-166|PWY-7227|PPGPPMET-PWY|PWY-7226|PWY-7221|PWY-6545|PWY-7187}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 18:13, 18 March 2018

Gene Tiso_gene_17272

  • left end position:
    • 2045
  • transcription direction:
    • POSITIVE
  • right end position:
    • 2201
  • centisome position:
    • 53.660458
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=SO3&oldid=22759"